BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494873
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48220.1 | Symbols: | Aldolase-type TIM barrel family prote... 1858 0.0
AT5G48230.2 | Symbols: EMB1276, ACAT2 | acetoacetyl-CoA thiolas... 106 7e-22
> AT5G48220.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr5:19549798-19552267 FORWARD LENGTH=1493
Length=1493
Score = 1858 bits (1006), Expect = 0.0
Identities = 1254/1366 (92%), Gaps = 47/1366 (3%)
Strand=Plus/Plus
Query 1 TTGTGATTATCCGCCGCACAAAAGTGTCTCCTCCACTCCACAAAATAGCATTCCCGGC-- 58
|||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 33 TTGTGATTATCCGCCGCACAGAAGTCTCTCCTCCACTCCAC-AAATAGCATTCCCGGCGA 91
Query 59 GAG--AGAGAGC---CACGAAGACTCaaa--aagaaaaaaaaTGGAA---GCAATGCGTT 108
||| ||||||| | ||||||||||| || ||||||||||||| ||| ||| ||
Sbjct 92 GAGACAGAGAGCGAAGAAGAAGACTCAAACCAAAAAAAAAAATGGAAGCTGCACTGCTTT 151
Query 109 CTCTTCAGCACTTTCCC-TCCTCCGCCATTCAACGACGGCTCTCTCAGTTTAACATCCAC 167
||||||||| | ||||| |||||||||| ||||||||| ||||||| ||||||| |||||
Sbjct 152 CTCTTCAGC-CCTTCCCTTCCTCCGCCACTCAACGACGTCTCTCTCCGTTTAACCTCCAC 210
Query 168 GATAAACTTACCAGACCCTCTTCTTGT-CTTCCTCTTCGTGCTCAAAAGTCTGGAATCAC 226
||| |||||||||||| ||||||| | | ||||||||||||||||||||||||||||||
Sbjct 211 AATACACTTACCAGACCTTCTTCTTATGC-TCCTCTTCGTGCTCAAAAGTCTGGAATCAC 269
Query 227 TGAAGGTTCCGGTAAAGTAAGT-GA-TCTCAAGATTAGTGAACAAGAAGTGGGGATGTAC 284
|||||||| | | || | | || || ||| | ||||| ||||||||||| ||||||
Sbjct 270 AGAAGGTTCTGATTCAG-CATTAGAGGCTAAAG-TAAGTGAGCAAGAAGTGGGAATGTAC 327
Query 285 CAGAATGAAGTAGTTGAGAGTCAGGGTATTAGGATAAGGAGAAGACCACCTACTGGACCT 344
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 328 CAGAATGAAGTAGTTGAGAGTCAAGGTATAAGGATAAGGAGAAGACCACCTACTGGACCT 387
Query 345 CCATTGCATTACGTTGGACCTTTTGAGTTCCGCCTCCAGAACGAGGGTAACACGCCTCGT 404
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 388 CCATTGCATTACGTTGGACCTTTTGAGTTCCGGCTTCAGAACGAGGGAAACACGCCTCGT 447
Query 405 AATATCTTGGAAGAGATCGTATGGCACAAGGATAAAGAAGTTGCTCAGATGAAAGAGAGG 464
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 AACATCTTGGAAGAGATCGTATGGCACAAGGATAAAGAAGTTGCTCAGATGAAAGAGAGA 507
Query 465 AAGCCTCTTTATACCTTGAAGAAGGCTCTTGATAATGTTCCTCCTGCTAAAGACTTCATT 524
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 AAGCCTCTTTATAGCTTGAAGAAGGCTCTTGATAATGTTCCTCCTGCTAAAGACTTCATT 567
Query 525 GGTGCTCTTAGATCAGCTCATCAAAGAACGGGGTTGCCTGGTTTAATAGCTGAGGTTAAG 584
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 568 GGTGCTCTTAGATCGGCTCACCAAAGAACGGGGTTGCCTGGTTTAATAGCTGAGGTTAAG 627
Query 585 AAAGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTAACCCGGTTGAAATTGCACAA 644
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 628 AAAGCTTCTCCAAGTAGAGGAATCCTGAGAGAGGATTTTAACCCTGTTGAAATTGCACAA 687
Query 645 GCTTATGAGAAGGGTGGAGCAGCATGTCTTAGTGTTTTGACAGATGACAAATACTTCAAG 704
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GCTTATGAGAAGGGGGGAGCAGCATGTCTTAGTGTTTTGACAGATGACAAATACTTCAAG 747
Query 705 GGAAGCTATGAGAACCTGCAAGCTATAAGGGAAGCTGGTGTAAAGTGCCCTTTGCTATTG 764
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 748 GGAAGCTATGAGAACCTGCAAGCTATAATGGAAGCTGGTGTGAAGTGCCCTTTGCTATTG 807
Query 765 AAAGAGTTCATTGTTGAGGCATGGCAGATATACTATGGTAGAAGTAAAGGCGCAGATGCA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 AAAGAGTTCATTGTTGAGGCATGGCAGATATACTATGGTAGAAGTAAAGGCGCAGATGCA 867
Query 825 GTTTTGTTGATCGCTTCTGTGTTACCTGACCTTGACATCAAATACATGATTAAGATTTGC 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GTTTTGTTGATCGCTTCTGTGTTACCTGACCTTGACATCAAATACATGATTAAGATTTGC 927
Query 885 AAAATACT-GAAAATGGCTACACTTGTGGAGGTTCATGACGAAAGGGAGATGGATCGTGT 943
|||||||| | || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 928 AAAATACTTGGAA-TGGCTACACTTGTGGAGGTCCATGACGAAAGGGAGATGGATCGTGT 986
Query 944 TCTTGCAATTGAAGGAGTCGAGCTCATTGGCATCAATAACCGTAACCTTGAAACATTTGA 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 TCTTGCAATTGAAGGAGTCGAGCTCATTGGCATCAATAACCGTAACCTTGAAACATTTGA 1046
Query 1004 GGTAGATCTTGGTATCACAAAGAAGCTACTTGAGGGAGAGCGTGGCGAATTGATCCGTCa 1063
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1047 GGTAGATCTTGGTATCACAAAGAAGCTACTTGAGGGAGAGCGTGGCGAACTGATCCGTCA 1106
Query 1064 aaaaaaCATCCTTGTGGTTGGAGAATCTGGGTTATTCACTCCCGAAGATATTGCCTTTGT 1123
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1107 AAAAGACATCCTTGTGGTTGGAGAATCTGGGTTATTCACTCCCGAAGATATCGCCTTTGT 1166
Query 1124 TCAAGAAGCCGGCGTCAAAGCAGTTCTAGTCGGTGAATCTCTTATTAAACAAAGTGATCC 1183
|||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 1167 TCAAGAAGCCGGTGTCAAAGCAGTTTTAGTCGGCGAATCTCTTATTAAACAAAGCGATCC 1226
Query 1184 GGGGAAGGCAATCAGCTCCCTTTTTGGAAGAGATATCTC----------C-GAGTAGAAA 1232
||||||||||||||| |||| |||||||||||| |||| | |||||||||
Sbjct 1227 CGGGAAGGCAATCAGCACCCTATTTGGAAGAGATGTCTCAGAGTAAATTCCGAGTAGAAA 1286
Query 1233 CTTTTTGTATAGAGAAAATCTTCATTGC-GTCTCCATTGAAGTCTCTTCTTTTTAAAAAT 1291
||||||||||||||||||||||||||| ||||| || | | ||||| |||| |
Sbjct 1287 CTTTTTGTATAGAGAAAATCTTCATTGAAGTCTCT-TT----T-T-TTCTTCTTAAG--T 1337
Query 1292 AATGCTCAAGTGTGCAG-GGACTTTTTGCCTTTACAGAAATGTCCA 1336
||||||||| |||| || ||| | |||||||||||||||||||
Sbjct 1338 GCCGCTCAAGTGCGCAGAGG-CTTGT-GCCTTTACAGAAATGTCCA 1381
Score = 106 bits (57), Expect = 7e-22
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 1335 CATGCACATTGTGTACTTAAAATTTAGCTATCAAATGTCAAATCTTGGTCGACGTTTCAA 1394
||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||| ||
Sbjct 1405 CATACACATTGTGTACTT-AAATTTATCCATCAAATGTCAAATCTTGGTCGACGTTTTAA 1463
Query 1395 TCAATACATGAGAATAAATCAT 1416
| | |||||||| |||||||||
Sbjct 1464 TGAGTACATGAGGATAAATCAT 1485
> AT5G48230.2 | Symbols: EMB1276, ACAT2 | acetoacetyl-CoA thiolase
2 | chr5:19552142-19555529 REVERSE LENGTH=1866
Length=1866
Score = 106 bits (57), Expect = 7e-22
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 1335 CATGCACATTGTGTACTTAAAATTTAGCTATCAAATGTCAAATCTTGGTCGACGTTTCAA 1394
||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||| ||
Sbjct 1829 CATACACATTGTGTACTT-AAATTTATCCATCAAATGTCAAATCTTGGTCGACGTTTTAA 1771
Query 1395 TCAATACATGAGAATAAATCAT 1416
| | |||||||| |||||||||
Sbjct 1770 TGAGTACATGAGGATAAATCAT 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69778757550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5