BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494898 Length=1698 Score E Sequences producing significant alignments: (Bits) Value AT5G48440.1 | Symbols: | FAD-dependent oxidoreductase family p... 2333 0.0 > AT5G48440.1 | Symbols: | FAD-dependent oxidoreductase family protein | chr5:19629658-19632639 REVERSE LENGTH=1705 Length=1705 Score = 2333 bits (1263), Expect = 0.0 Identities = 1570/1715 (92%), Gaps = 34/1715 (2%) Strand=Plus/Plus Query 1 GTTGACTTTTGAAAGTTCAAACCTTTACGATACCAAAAA-C--CTTCACCAATGGTTTCC 57 ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| Sbjct 1 GTTGACTTTTGAAAGTTCAAACCTTTACGATACCAAAAACCTTCTTCTCCAATGGTTTCC 60 Query 58 ATTTTCCTTCAATCACCAACAAGTTTAACATCC-CAGAGCTACCCATTTTCATCTCGGAG 116 ||||||||||||||||| || ||||||| || | |||||||||||||||||||||||| Sbjct 61 ATTTTCCTTCAATCACCCACCTTTTTAACA-CCACTGAGCTACCCATTTTCATCTCGGAG 119 Query 117 CTCCACCCGGAGAACCCGACGTGGAGCTTCTCCATCACTTCGTGTCACAGCTTCTCGTAG 176 ||||||| |||||||| || ||||||||||| ||||| |||||||||||||||||||| Sbjct 120 CTCCACCAAGAGAACCCAACATGGAGCTTCTCTGTCACTACGTGTCACAGCTTCTCGTAG 179 Query 177 CT-CTTACGATGTAGTCGTTGTTGGTGGTGGGATCATCGGATTGACCATAGCCCGCCAAT 235 || ||| |||||| || ||||| |||||||||||||| || || |||||||||||||||| Sbjct 180 CTCCTT-CGATGTTGTTGTTGTAGGTGGTGGGATCATTGGGTTAACCATAGCCCGCCAAT 238 Query 236 T-CTTAACCGGGTCGGATCTATCCGTTGCTGTTGTCGATAAAGCCGTCCCTTGCTCCGGC 294 | ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 239 TCCTT-ACCGGGTCGGATCTATCTGTTGCTGTTGTCGATAAAGCCGTACCTTGCTCCGGC 297 Query 295 GCCACCGGTGCCGGGCAGGGATATATATGGATGACTCACAAGAAACCAGGCACTGATGTG 354 ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 298 GCCACCGGTGCCGGGCAGGGATATATATGGATGACACACAAGAAACCAGGCAGTGATGTG 357 Query 355 TGGGACTTGACCTTGAGGAGCCATGAACTCTGGCACAAGCTTGCAGAGAGCTTGAAC-GT 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 358 TGGGACTTGACCTTGAGGAGCCATGAACTCTGGCACAAGCTTGCAGAGAGCTTG-ACTGA 416 Query 414 TGATGGTCTTGATCCTGAAGAGTTGCTTGGCTGGAAAAAGACAGGAAGCTTACTCATTGG 473 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 417 TGATGGTCTTGATCCTGAAGAGTTGCTTGGCTGGAAAAAGACAGGAAGCTTGCTCATTGG 476 Query 474 AAGGACCTCTGAGGAATGTGTTGCTCTGAAGCAAAAGGTTCACGAGCTTTCTGAAGCTGG 533 |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 477 TAGGACCACTGAGGAATGTGTTGCTCTGAAGCAAAAGGTTCATGAGCTATCTGAAGCTGG 536 Query 534 GTTAAGAACTGAATATTTGTCTAGTGATGAGTTGTTGTTAAAGGAGCCTGCGGTTCTTGT 593 |||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| Sbjct 537 GTTAAGAACTGAATATTTGTCTAGTGCTGAGTTGTTGTTAAAGGAGCCTGCGATACTTGT 596 Query 594 GGATGATAATTCCGGGGCTGCATTTCTTCCCGATGATTCACAACTGGATGCTCATCGCGC 653 |||||||| | || |||||||||||||| ||||||||||| |||| || ||||| || Sbjct 597 AAATGATAATACTGGTGCTGCATTTCTTCCTGATGATTCACAGTTGGACGCCCATCGTGC 656 Query 654 AGTTGCTTATATTGAGAAGGGTAACAGAGAGTTTGCACCTGAAGGAAGATATGCCGAGTT 713 ||||||||||| ||||||||||| |||| ||||||| | | ||| |||||||||||||| Sbjct 657 GGTTGCTTATATCGAGAAGGGTAATAGAGCGTTTGCAACAGCAGGCAGATATGCCGAGTT 716 Query 714 CTATCATGAACCAGTTACAGGTTTAATAAGGTCTGATGGGCG-TAGCGCGGAGGTTGCAG 772 |||| ||||||||||||||||||||||||||||||||||| | |||| || |||||| | Sbjct 717 CTATAATGAACCAGTTACAGGTTTAATAAGGTCTGATGGG-GATAGCAAGGTGGTTGCTG 775 Query 773 GTGTTCAGACTTCT-AAACGTAACTTGTATGGTAAGAAGGCTACGATAGTAGCTGCTGGT 831 | ||| |||||| | ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 776 GCGTTAAGACTT-TGAAACGCAACTTGTATGGTAAGAAGGCTACTATAGTAGCTGCTGGT 834 Query 832 TGCTGGAGTGGATCTCTGATGCATGAATTGCTTAAAGACTGCAACATTTCGCTGGACGTT 891 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 835 TGCTGGAGTGGATCTCTGATGCATGAATTGCTTAAAGACTGCAACATTCCGCTGGACGTT 894 Query 892 CCTGTGAAGCCAAGAAAGGGGCATCTACTTGTGGTAGAAAATTTTGATTCATTCCACTTA 951 || ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 895 CCGGTGAAGCCAAGAAAGGGGCATCTGCTTGTGGTAGAGAACTTTGATTCATTCCACTTA 954 Query 952 AATCAT-GGATTAATGGAGGCTGGTTACACAAATCATCAAAGTGCTTCAGCTCCAGGATT 1010 |||||| ||| ||||||||||||||||| | ||||||||||||||||||| | ||||||| Sbjct 955 AATCATGGGA-TAATGGAGGCTGGTTACTCGAATCATCAAAGTGCTTCAGTTTCAGGATT 1013 Query 1011 GGATGTCGAGGAACGGATGCTATCTATTTCCATGACAGCCACAATGGACACATCAGGAAA 1070 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 GGATGTCGATGAACGGATGCTATCTATTTCCATGACAGCCACAATGGACACATCAGGAAA 1073 Query 1071 CCTTATCCTCGGGAGCAGCCGTGAGTTTGTCGGGTTCGACACTGAAGCTGATGAGTTTAT 1130 |||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 CCTTGTTCTTGGGAGCAGCCGTGAGTTTGTCGGGTTCGACACTGAAGCTGATGAGTTTAT 1133 Query 1131 CATCCGTTGCATATGGGAGCGTGCAGCAGAATTCTTCCCCAAGTTACGTGATATTTCCCT 1190 |||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct 1134 CATCCGTTGCATATGGGAGCGTGCTGCAGAATTCTTTCCTAAGTTACGTGATATTTCCCT 1193 Query 1191 CGAAGATTTCATCCGGAACAGGAAAGTGAGAGTCGGGTTGCGTCCTTACATGCCTGATGG 1250 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || Sbjct 1194 CGAAGATTTCATCCGTAACAGGAAAGTGAGAGTCGGGTTGCGCCCTTACATGCCTGACGG 1253 Query 1251 AAAGCCAGTGATAGGATCCGTGCCCGGACTACAAAACCTATACTTAGCAGCTGGGCATGA 1310 ||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| Sbjct 1254 GAAGCCAGTGATAGGATCCGTGCCCGGATTACAAAACATGTACTTAGCAGCTGGGCATGA 1313 Query 1311 AGGAGGTGGACTTTCCATGGCTCTAGCAACAGCGGAAATGGTAACAGACATGGTACTTGG 1370 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1314 AGGAGGTGGACTTTCCATGGCTCTAGCAACAGCGGAAATGGTAACGGACATGGTACTAGG 1373 Query 1371 GAAACC-TGAACAGGTGGATACCTCAGCGTTTGGGGTTAAAGGACGT--T-GTTGCTGAT 1426 ||||| | | || |||||||| ||| |||||||||||||||| ||| | ||||||||| Sbjct 1374 AAAACCATCA-CAAGTGGATACTTCAACGTTTGGGGTTAAAGGGCGTCGTTGTTGCTGAT 1432 Query 1427 GAAATAGTAGCAGTTCGGTTTAGTTAAGAGACTGAATCTTCTTAAGCATTGTGGTTGCTA 1486 ||||||| ||||||| ||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 1433 GAAATAGAAGCAGTTTGGTTTAGTTAAGAGAGTGAATCCTCTTAAGCATTGTGGTTGCTA 1492 Query 1487 -AAT-GGTGTCCCAAAGGAAATTTCTATGAGCTACACAAATCCGGTGTTGGTTTAGTCCC 1544 || || ||| ||||||||| ||||||||||||| ||||| ||||||||||||||| Sbjct 1493 TAAACGGGGTCTTAAAGGAAATGTCTATGAGCTACATAAATCTAGTGTTGGTTTAGTCC- 1551 Query 1545 GGTTTTAGTAATATGTACTAAGACCAATTTTAATTCTACGTCTTGAAACCAGACTTTTTC 1604 |||||||||| || |||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1552 GGTTTTAGTA-TA----CTAAGACCAATTCTAATTCTACGTCTTTAAACCAGACTTTTTC 1606 Query 1605 TCTAGCTTTCTACATGCGTTATATATTTTTTATATACGGTTGATTACAAATATGGTTCCA 1664 |||||||||| |||||| | || ||||||| | ||||||||||||||||||||| ||||| Sbjct 1607 TCTAGCTTTCGACATGCATGATCTATTTTT-A-ATACGGTTGATTACAAATATG-TTCCA 1663 Query 1665 TTCAAAATATACTCAA-CAATAAGTTAACCATTTA 1698 |||||||||| ||||| |||||| ||||||||||| Sbjct 1664 TTCAAAATATTCTCAAACAATAATTTAACCATTTA 1698 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83935311240 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5