BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494914
Length=2048
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48520.1 | Symbols: | unknown protein; Has 609 Blast hits t... 3360 0.0
> AT5G48520.1 | Symbols: | unknown protein; Has 609 Blast hits
to 593 proteins in 129 species: Archae - 0; Bacteria - 41;
Metazoa - 390; Fungi - 40; Plants - 64; Viruses - 0; Other Eukaryotes
- 74 (source: NCBI BLink). | chr5:19661213-19666436
FORWARD LENGTH=2337
Length=2337
Score = 3360 bits (1819), Expect = 0.0
Identities = 1979/2055 (96%), Gaps = 15/2055 (1%)
Strand=Plus/Plus
Query 1 GAGGCAATCGTATAATTTCCCACAGGCGATCGGAGATGAGCAGCGCGAGACTGTGCTCTC 60
|||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 161 GAGGCAATCGCATAA-TTCCCACCGGCGATCGGAGATGAGCAGCGCGAGACTGTGCTCTC 219
Query 61 TTGTGGCGGAGCTAGGTTACGAAGGCGCCGGAAAATTGGATCCCGACAGCTTCGAGTGGC 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 220 TTGTGGCGGAGCTAGGTTACGAAGGCGCCGGAAAATTGGATCCCGATAGCTTCGAATGGC 279
Query 121 CGTTTCAGTACGACGATGCTCGACCTATCCTCGACTGGATCTGTTCCTCTCTTCGCCCCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 280 CGTTTCAGTACGACGATGCTCGACCTATCCTCGACTGGATCTGTTCCTCTCTTCGTCCTT 339
Query 181 CCAATGTCCTCTCCCTCGCTGAACTATCCCTATATGAGCAATTTCAAAGAGATGGGAAAC 240
||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct 340 CCAATGTCCTCTCTCTCGCCGAACTATCACTATATGAGCAATTTCAACGAGATGGGAAAC 399
Query 241 TCTTAGAGGGTGACGATCTAGACCAGGCTTATGATAGCATATCAGCATTTTCTTCCAGGA 300
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 400 TCTTAGAGGGCGATGATCTAGACCAGGCATATGATAGCATATCAGCATTTTCTTCCAGGA 459
Query 301 GAAATAACCAGGAGGCGGTTTTTGGAGCAGAAGAAAGCATTAAAGAAGTAAGAGATGCAA 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GAAATAACCAGGAGGCCGTTTTTGGAGCAGAAGAAAGCATTAAAGAAGTAAGAGATGCAA 519
Query 361 CTTTGGCGCATAAGGCTGAAGCCTTAGAGTTGCAGAGGCAGCTAAGGCGGTTACAGACTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 520 CTTTGGCGCATAAGGCTGAAGCCTTAGAGTTGCAGAGGCAGCTAAGGCGGTTACAAACTC 579
Query 421 AATATGATTTACTCACTGGCCAATCTTCAGCTCTGATTCAAGGGAGGCGTGCTCGAGTTG 480
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 580 AATATGATTTACTCACTGGCCAATCTTCAGCTCTTATTCAAGGGAGACGTGCTCGAGTTG 639
Query 481 CTGCAACTTCTGCTGTCTCTGGACAGATAACATCTATAGAAGACAGCCTGTCTGCTAGAA 540
|||||||||||||||||||||||||||||||| ||||||||||||| | |||||| |||
Sbjct 640 CTGCAACTTCTGCTGTCTCTGGACAGATAACAGCTATAGAAGACAGTTTATCTGCTCGAA 699
Query 541 ATTTGCAGATGAATGGAGTTCTAGGAAGATTGGCTTCCACTTCTCAAGAGCTGGCGCATT 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 700 ATTTGCAGATGAATGGAGTTCTAGGAAGACTGGCTTCCACTTCTCAAGAGCTGGCGCATT 759
Query 601 ATCATTCTGGCGAAGAGGATGGAATATACTTAGCATACTCTGATTTCCATGCCTACTTGG 660
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 760 ATCATTCTGGCGAAGAGGATGGAATATACTTAGCATACTCCGATTTCCATGCCTACTTGG 819
Query 661 CCGGAGATTCAGCCTGCACAAAGGAGCTAAATCAGTGGTTTGCTAAGCAACTAGATACAG 720
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 820 CTGGAGATTCAGCCTGCACAAAGGAGCTAAATCAGTGGTTTGCTAAGCAGCTAGACACAG 879
Query 721 GGCCATACCGTTTAGTTGCAGAGGAAGGAAAATCGAAATGCTCATGGGTCAGTCTTGATG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GGCCATACCGTTTAGTTGCAGAGGAAGGAAAATCGAAATGCTCATGGGTCAGTCTTGATG 939
Query 781 ATACATCAAACATGTTGCGAGATTTGGAAAAGTCACAGCATCAACGCGTAGCTGAACTGC 840
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 940 ATACATCTAACATGTTGCGAGATTTGGAAAAGTCACAGCATCAACGTGTAGCTGAACTCC 999
Query 841 AACGGCTTCGGTCCATCTTTGGAACAAGTGAGAGACAATGGATTGAAGCTCAGGTCGAGA 900
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1000 AACGGCTTCGGTCCATCTTTGGAACAAGTGAGAGACAATGGATTGAAGCCCAGGTGGAGA 1059
Query 901 ATGCTAAGCAACAAGCTATTCTCTTGACGCTCAAATCTCAAGTAACATCAGTTGAAGCTC 960
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1060 ATGCTAAGCAACAAGCTATTCTTTTGACACTCAAATCTCAAGTAACATCAGTGGAAGCTC 1119
Query 961 ATATTCATTTTGATCTACATTCTCTAAGGAGAAAACATGCAGATCTAGTCGAAGAAATCT 1020
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1120 ATATTCATTTTGATCTACATTCTCTGAGGAGAAAACATGCAGATCTAGTCGAAGAAATCT 1179
Query 1021 CTACCCTTTATCAGAAAGAAGAAAAACTCTTATCTGAGACTATTCCCGAATTATGTTGGG 1080
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1180 CTACCCTTTATCAGAAAGAAGAAAAACTCTTATCTGAGACTATTCCCGAACTATGTTGGG 1239
Query 1081 AGCTCGCACAACTGCAGGACACCTATATCTTGCAAGGTGACTACGATCTAAAGGTGATGC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1240 AGCTCGCACAACTGCAGGACACCTATATCTTGCAAGGTGACTACGATCTAAAGGTCATGC 1299
Query 1141 GTCAAGAGCTGTATATTAGTAAGCAGAAAGTGTTCATCAATCATCTGGTTAATCAGCTAG 1200
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1300 GTCAAGAACTGTATATTAGTAAACAGAAAGTGTTCATCAATCATCTGGTTAATCAGCTAG 1359
Query 1201 CAAGACACCAGTTCTTGAAATTAGCATGTCAGCTAGAAAAGAAAAACATGCTTGGAGCAT 1260
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 CAAGACACCAGTTCTTAAAATTAGCATGTCAGCTAGAAAAGAAAAACATGCTTGGAGCAT 1419
Query 1261 TCTCTCTGCTAAAAGTAATTGAATCCGAACTTCAGGGTTACCTCTCCGCCACAAGAAGCC 1320
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1420 TCTCTCTGCTAAAAGTAATTGAATCCGAACTTCAGGGCTACCTCTCCGCCACAAGAAGCC 1479
Query 1321 GTGTGGGGCGGTGTTCGGCACTGATCCAAGCTGCATCTGATGTGCAAGAACAAGGAGCAG 1380
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1480 GTGTGGGGCGATGTTCGGCACTGATACAAGCTGCATCTGATGTGCAAGAACAAGGAGCAG 1539
Query 1381 TAGATGACCGTGACAGCTTTTTACATGGAGTTAGAGATCTCTTGAGCATTCACTCAAATA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 TAGATGACCGTGACAGCTTTTTACATGGAGTTAGAGATCTCTTGAGCATTCACTCAAATA 1599
Query 1441 CCCAAGCCGGATTATCAACATATGTCTCAGCTCCAGCCATCATTCAGCAGATAGTTGCTC 1500
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 CCCAAGCCGGATTATCAACTTATGTCTCAGCTCCAGCCATCATTCAGCAGATAGTTGCTC 1659
Query 1501 TTCAATCGGATCTGTCGTCTCTTCAGTCTGACCTCGAGAATTCCCTTCCAGATGACCGAA 1560
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 TTCAATCCGATCTGTCGTCTCTTCAGTCTGACCTCGAGAATTCCCTTCCAGATGACCGAA 1719
Query 1561 ACAGATGCATTAATGAGCTGTGTACCCATATTCAGAA-CTTGCAGCAACTGCTCTTTGCG 1619
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1720 ATAGATGCATTAATGAGCTGTGTACCCATATTCAGAATCT-GCAGCAACTGCTCTTTGCG 1778
Query 1620 TCTTCAACTACGGCACAACCCATATTGACACCATGGCCACTGATGAAAGAACTTGATGAA 1679
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1779 TCTTCAACTACGGCACAACCCATATTGACACCTTGGCCACTGATGAAAGAACTTGATGAA 1838
Query 1680 ATGGGAAAAATCAACTCCAAACTCTCTACAGCGGTGGAAGAGGTGACGCTTGAGCACCGC 1739
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1839 ATGGGGAAAATCAACTCCAAACTCTCTACAGCAGTGGAAGAGGTGACGCTTGAGCACCGC 1898
Query 1740 AATAAAAGGGAGATTGTGAAGCATCACGCCAAGGATGTGGAACTTCAAAGACGGGTATTT 1799
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1899 AATAAAAGGGAGATTGTGAAGCATCACGCCAAGGACGTGGAACTTCAAAGGCGGGTATTT 1958
Query 1800 GTGGACTTTTTCTGCAACCCAGAGCGATTGAGAAACCAAGTGAGGGAACTCAATGCGCTC 1859
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1959 GTGGACTTTTTCTGCAACCCAGAGCGATTGAGAAACCAAGTGAGGGAACTCAATGCACTC 2018
Query 1860 GTTCGTGCTCGCCAAGCCTCATCATCGTAGGTCCACAC--CATCACCATAAGTACATAGC 1917
|||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||
Sbjct 2019 GTTCGTGCTCGCCAAGCCTCATCATCGTAGGTTCTCACTTC-TCACCATAAGTACATAGC 2077
Query 1918 ACAAGTGATCTCTCTTTAGTTTTTTGTCATTTCGCTTTGTGATTGTATTATCTAGTGTTT 1977
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2078 ACAAGTGATCTCTCTT-AGTTTTTTGTCATTTCACTTTGTGATTGTATTATCTAGTGGTT 2136
Query 1978 GATTGATTTTACTTTCTGTCCATCTT-T-T-GTTTCTAAGCTTT-GTGGTTTCGTGTTGG 2033
|||||||||||||| ||| ||||||| | | |||||| || ||| ||||||| || | ||
Sbjct 2137 GATTGATTTTACTTACTGCCCATCTTCTATTGTTTCTGAG-TTTCGTGGTTT-GT-T-GG 2192
Query 2034 GGTTATTTGTGCTTT 2048
||||||||| |||||
Sbjct 2193 GGTTATTTGAGCTTT 2207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101505501990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5