BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494917 Length=836 Score E Sequences producing significant alignments: (Bits) Value AT5G48545.1 | Symbols: HINT3 | histidine triad nucleotide-bindi... 1232 0.0 > AT5G48545.1 | Symbols: HINT3 | histidine triad nucleotide-binding 3 | chr5:19676117-19678109 FORWARD LENGTH=869 Length=869 Score = 1232 bits (667), Expect = 0.0 Identities = 755/797 (95%), Gaps = 8/797 (1%) Strand=Plus/Plus Query 43 AATTCATTATTTGCTGGATTCGG--AATAATAATTGAATTCAGAAAATGGAAGCTAGAAG 100 ||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||| Sbjct 66 AATTCATTATTTGCTCGATTCGGAAAATCGTAATTGAATTCAGATAATGGAAGCTAGAAG 125 Query 101 GCTCGCGATCCTCTGTTCTCACCTGAACCCACCTGGTCCGAACCCGACCCGAGACCCGAT 160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126 ACTCGCGATCCTCTGTTCTCACCTGAACCCACCTGGTCCGAACCCGACCCGAGACCCGAC 185 Query 161 TCTCAGGGTTTCCGATTGTAGTAGCTCAGCTTCTTCCGGCGACGGGAAAGTGGAATCATC 220 ||||||||| ||||| | | ||||||| | |||||||||||||||||||||||||||||| Sbjct 186 TCTCAGGGTCTCCGA-T-T-GTAGCTCTGGTTCTTCCGGCGACGGGAAAGTGGAATCATC 242 Query 221 CAATCTCCAAAACGACTGCGTTTTCTGCAAGATTATCCGTGGCGAGTCTCCATGTCTCAA 280 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 TACTCTCCAAAACGACTGCGTTTTCTGCAAGATTATCCGTGGCGAGTCTCCATGTCTCAA 302 Query 281 GTTGTACGAGGATGATATGTGTTTGTGTATTTTGGATACTAATCCACTAAGCCATGGGCA 340 ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 303 GTTGTACGAGGATGATATGTGTTTGTGTATTCTGGATACTAATCCACTAAGTCATGGGCA 362 Query 341 CTCTCTTATCATTCCCAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAGTTGT 400 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 CTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAGTTGT 422 Query 401 TGCTGCCATGTGTTCTAAAGTGCCGCTTATCAGCAACGCCATCGTGAAAGCTACCGGTAG 460 |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 423 TGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCCATCGTGAAAGCTACCGGGAG 482 Query 461 TGATTCATTTAACTTATTGGTTAACAACGGCGCAGCAGCTGGGCAAGTCATATTTCACAC 520 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 483 TGACTCATTTAACTTATTGGTTAACAACGGCGCAGCAGCTGGACAAGTCATATTTCACAC 542 Query 521 ACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAGAGCTTACG 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 ACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAGAGCTTACG 602 Query 581 GAGACACACTCTGAAACTTGACAAGGAAGCATCTCAATTGGTATCGCGTGTTCGACAACA 640 ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||| Sbjct 603 GAGACACTCTCTGAAACTTGACAAGGAAGCATCTCAACTGGTATCGTGTGTTCGACGACA 662 Query 641 ATTGTGCAACCTTCCTGAAGAACAAATGGTTCAACCCTCATAAAAGTCCCTTCTCAAGAA 700 ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 663 CTTGTGCAGCCTTCCTGAAGAACAACTGGTTCAACCCTCGTAAAAGTCCCTTCTCAAGAA 722 Query 701 ACCCATTGTTGAAACTTTAGATACAGAATCCAAACCCAAAAGTATATTCTGTATAGTTCA 760 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 723 ACCCATTGTTGTAACTTTAGATACAGAATCCAAACCCAAA-GTATATTCTGTATAGTTCA 781 Query 761 TATTCAGTCTCAGTTTCATTT-ATATATATTCTTGAATCTTTGTTATTTTATCAAGATTT 819 |||||||||||| ||| |||| || || |||||||||||| ||||| ||||||||||||| Sbjct 782 TATTCAGTCTCA-TTTGATTTCATCTAAATTCTTGAATCTCTGTTACTTTATCAAGATTT 840 Query 820 AGTGATAGAAGTAGAAG 836 ||||||| ||||||||| Sbjct 841 AGTGATACAAGTAGAAG 857 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40739893217 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5