BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494942 Length=975 Score E Sequences producing significant alignments: (Bits) Value AT5G48790.1 | Symbols: | Domain of unknown function (DUF1995) ... 1537 0.0 > AT5G48790.1 | Symbols: | Domain of unknown function (DUF1995) | chr5:19779860-19782050 REVERSE LENGTH=1174 Length=1174 Score = 1537 bits (832), Expect = 0.0 Identities = 931/979 (95%), Gaps = 5/979 (1%) Strand=Plus/Plus Query 1 ATATGTCACCGTCCTTCTCCATCGCCACCGCCGTCTCACCGGCTTCTCTAGCCGGAACTC 60 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 72 ATATGTCACCGTCCTTCTCCATCGCCACCACCGTCTCACCGGCTTCTCTAGCCGGGACTC 131 Query 61 TGGTCTCTAACTCAAAGAATGTTTTGTGTAGTTTACATTGGAAGAACAATGAT-TGTACC 119 ||| ||| ||||||||||||||||||||||||||||||| |||||||||||| | |||| Sbjct 132 TGGCCTCGAACTCAAAGAATGTTTTGTGTAGTTTACATTCAAAGAACAATGATAT-TACC 190 Query 120 AAGACGAATAGGAATCTCAAGTTTAGAGCTGGTTCTGTTTCTGGAGGGTATAACAAC--- 176 ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 191 AAGACAAATAGGAATCTGAAGTTTAGAGCTTGTTCTGTTTCTGGAGGGTATAACAACAAT 250 Query 177 ACATCTGTGGACAATGTACCTTTTCCTCGTGATTACTTCGAGCTCATTAACCAAGCCAAA 236 |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| Sbjct 251 ACATCTGTGGACAATGTACCTTTTCCTCGTGATTACGTCGAGCTCATTAATCAGGCCAAA 310 Query 237 GAAGCAGTTGAATTGGCAATGAAGGATGAGAAACAGTTAATGGAAATTGAGTTCCCAACA 296 |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 311 GAAGCAGTGGAAATGGCTTTGAAGGATGAGAAACAGTTAATGGAAATTGAGTTCCCAACA 370 Query 297 TCTGGTCTAGCATCTGTGCCAGGTGATGGTGAAGGAGCTACAGAAATGACAGAAAGTATA 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 371 TCTGGTCTAGCATCTGTGCCAGGTGATGGTGAAGGAGCTACAGAAATGACAGAAAGTATA 430 Query 357 AATATGATACGCGAGTTTTGTGACCGACTATTAGCTCCTGAAAAGGCTCGAACCACAAGA 416 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 431 AATATGATACGCGAGTTTTGTGACCGACTATTAGCTCCTGAAAAGGCTCGAAGTACAAGA 490 Query 417 ATTTTCTTCCCGGAAGCAAACGAAGTAAAATTTGCTCAAAAGACAGTCTTTGGAGGAACT 476 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 491 ATTTTCTTCCCGGAAGCAAATGAAGTCAAATTTGCTCAAAAGACAGTCTTTGGAGGAACT 550 Query 477 TACTTCAAGTTGGACTATCTAACAAAACCCTCTCTTTTTGAGGATTTTGGTTTCTTTGAG 536 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 551 TACTTCAAGTTGGACTATCTAACAAAACCATCTCTTTTTGAGGATTTTGGTTTCTTTGAG 610 Query 537 AGAGTAAAAATGTCGGATCGAGTGAAGCCAGAAGACGAATTGTTTCTTGTCGCATACCCA 596 |||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 611 AGAGTAAAAATGGCAGATCGAGTGAAGCCAGAAGACGAACTGTTTCTTGTCGCATACCCG 670 Query 597 TATTTTAATGTCAACGAGATGCTCGTAGTGGAAGAGCTATACAAGGAAGCTGTTGTGAAC 656 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 671 TATTTTAATGTCAACGAGATGCTTGTAGTGGAAGAGCTCTACAAGGAAGCTGTTGTGAAC 730 Query 657 ACTGATCGAAAACTAATCATCTTCAATGGAGAACTTGACCGCATACGATCGGGCTACTAT 716 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 731 ACTGACCGAAAACTAATCATCTTCAATGGAGAACTTGACCGCATACGATCGGGTTACTAT 790 Query 717 CCAAAGTTCTTTTACCCGAAACTTGCTGCACTGACCAAGACTCTTCTTCCAAAGATGGAG 776 |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||| Sbjct 791 CCAAAGTTCTTTTATCCGAAACTGGCTGCACTTACCAAGACACTTCTTCCAAAGATGGAG 850 Query 777 ACAGTGTACTACATCCACAATTTCAAGGGACAAAAAGGAGGTGTCCTTTTCAGATGTTAT 836 |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 851 ACAGTGTACTACATCCACAATTTCAAAGGACAGAAAGGAGGTGTACTTTTCAGATGTTAT 910 Query 837 CCAGGTCCATGGCAAGTACTGAGGAGAACAAGGAACAGTTACATATGTGTTCATCAGCAA 896 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 911 CCAGGTCCATGGCAAGTACTGAGGAGAACAAGGAACAAATACATTTGTGTTCATCAGCAA 970 Query 897 GAATCCATGCCTTCTCTCAAGGAAGTTGCCCTCGACATTCTTGCGTCCGCTTGAGATTCT 956 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 971 GAATCCATGCCTTCTCTTAAGGAAGTTGCCCTCGACATTCTTGCGTCCGCTTGAGATTTT 1030 Query 957 TGTAATGAAACTTCTTCAT 975 |||| |||||||| ||||| Sbjct 1031 TGTATTGAAACTTTTTCAT 1049 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47722439650 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5