BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494953
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48900.1 | Symbols: | Pectin lyase-like superfamily protein... 2318 0.0
AT3G07010.1 | Symbols: | Pectin lyase-like superfamily protein... 1074 0.0
AT5G55720.1 | Symbols: | Pectin lyase-like superfamily protein... 148 1e-34
> AT5G48900.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:19825137-19829092 FORWARD LENGTH=1540
Length=1540
Score = 2318 bits (1255), Expect = 0.0
Identities = 1448/1537 (94%), Gaps = 29/1537 (2%)
Strand=Plus/Plus
Query 1 tcttttcatcttccttcttccttctccttcttcttTGTTCAAACACAAAAGACCGACAAA 60
||||||||||||||||||||| | | ||||||| | || |||||||||| |||||||||
Sbjct 4 TCTTTTCATCTTCCTTCTTCC-T-T-CTTCTTC--T-TT-AAACACAAAAAACCGACAAA 56
Query 61 AGCCTCTGTCTTAGACAAAGATAAAGAAACAGAACAAAGAAAGAGCAATGGCTATTACAC 120
||||||||||| |||| ||| |||||||||||||| || |||| |||||||| ||||||
Sbjct 57 AGCCTCTGTCTCGGACAGAGACAAAGAAACAGAACAGAGCAAGAACAATGGCTGTTACAC 116
Query 121 AAATACTTGTCCTCTTTGCTTCTGCATTACTCCTATCAATGTTCTTCACTGGCGTCGATT 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AAATACTTGTCGTCTTTGCTTCTGCATTACTCCTATCAATGTTCTTCACTGGCGTCGATT 176
Query 181 CCACAA-G-----TG--A-A---CA-G-----GCAGTTGAGAATCCAGAGGAAGTAGCTG 222
|||||| | || | | || | ||||||||||||||||||||||||||||
Sbjct 177 CCACAAGGTCTAATGAAACATGGCATGAACATGCAGTTGAGAATCCAGAGGAAGTAGCTG 236
Query 223 CCATGGTGGACATGAGCATTCGAAACAGCACAG-AACGAAGAAAATTAGGATACTTCTCA 281
||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct 237 CCATGGTGGACATGAGCATTCGAAACAGCACAGCGA-GAAGAAGATTAGGATACTTCTCA 295
Query 282 TGTTCAACCGGAAATCCAATCGACGACTGTTGGCGTTGTGATCGGAGATGGCAATCTCGG 341
|| |||||||||||||||||||| || |||||||||||||| |||||||||||||| |||
Sbjct 296 TGCTCAACCGGAAATCCAATCGATGATTGTTGGCGTTGTGACCGGAGATGGCAATCCCGG 355
Query 342 CGAAAAGC-TTTAGCCAATTGCGCAATCGGATTCGGTCGAAACGCAATCGGAGGCCGAGA 400
|||||| | | ||||||||||||||||||| |||||||| || |||||||| || ||||
Sbjct 356 CGAAAA-CATCTAGCCAATTGCGCAATCGGGTTCGGTCGCAATGCAATCGGCGGTAGAGA 414
Query 401 CGGTCGTTACTACGTCGTAAGCGACCCAAACGACGATAACCCGGTTAACCCTAAACCGGG 460
||||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 415 CGGTCGTTACTACGTAGTGAGTGATCCAAACGACGATAACCCGGTTAACCCTAAACCGGG 474
Query 461 AACATTACGTCACGCAGTAATTCAAGAAGAACCACTATGGATTGTCTTTAAACGTGACAT 520
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 475 AACATTACGTCACGCAGTAATTCAAGAAGAACCATTATGGATCGTCTTTAAACGTGACAT 534
Query 521 GGTCATAACATTAAAAGAAGAACTAATCATGAACAGTTTCAAAACAATCGATGGTCGTGG 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GGTCATAACATTAAAAGAAGAACTAATCATGAACAGTTTCAAAACAATCGATGGTCGTGG 594
Query 581 TGTGAATGTTCACATAGCTAATGGTGCATGTATCACGATTCAGTTCGTGACTAACATTAT 640
|| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 595 CGTCAACGTTCACATAGCTAATGGTGCATGCATCACGATTCAGTTCGTGACTAACATTAT 654
Query 641 CATTCATGGGATTCATATTCATGATTGTAGACCAACTGGTAACGCTATGGTTAGAAGCTC 700
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CATTCATGGGATACATATTCATGATTGTAGACCAACTGGTAACGCTATGGTTAGAAGCTC 714
Query 701 TCCTTCACATTATGGTTGGAGAACTATGGCTGATGGAGATGGGATTTCGATTTTCGGGTC 760
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TCCTTCGCATTATGGTTGGAGAACTATGGCTGATGGAGATGGGATTTCGATTTTCGGGTC 774
Query 761 GAGTCATATTTGGATTGATCATAATTCGCTTTCGAATTGTGCTGATGGGCTTATTGATGC 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GAGTCATATTTGGATTGATCATAATTCGCTTTCGAATTGTGCTGATGGGCTTATTGATGC 834
Query 821 TGTTATGGCTTCTACTGCTATTACTATCTCCAATAATTACTTCACACACCACAATGAGGT 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TGTTATGGCTTCTACTGCTATTACTATCTCCAATAATTACTTCACACACCACAATGAGGT 894
Query 881 TATGTTATTGGGACATAGTGATACCTATACAAGGGATAAGGTTATGCAAGTTACAATTGC 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 895 TATGTTATTGGGACATAGTGATACCTATACAAGGGATAAGGTTATGCAAGTTACAATAGC 954
Query 941 TTATAATCATTTCGGTGAAGGTCTTATTCAGAGAATGCCAAGGTGTAGGCATGGATATTT 1000
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 955 TTATAATCATTTTGGTGAAGGTCTTATTCAGAGAATGCCGAGGTGTAGGCATGGATATTT 1014
Query 1001 TCATGTAGTGAACAATGACTATACGCATTGGGAAATGTATGCAATCGGTGGCAGTGCGAG 1060
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1015 TCATGTAGTTAACAATGACTATACACATTGGGAAATGTATGCGATCGGTGGCAGTGCGAG 1074
Query 1061 TCCTACCATTAACAGCCAAGGAAACAGATATCTCGCCCCGAGAAACCGGTTTGCGAAAGA 1120
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 1075 TCCTACCATTAACAGCCAAGGAAATAGATATCTCGCCCCAAGAAACCGGTTTGCTAAAGA 1134
Query 1121 GGTAACAAAGAGAGACTATGCAGGGCAATGGCAATGGAGGCATTGGAATTGGAGATCAGA 1180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GGTGACAAAGAGAGACTATGCAGGGCAATGGCAATGGAGGCATTGGAATTGGAGATCAGA 1194
Query 1181 AGGAGATCTTTTCTTAAACGGAGCATTCTTCACACGTTCTGGATCAGGACTTGGAGCGAG 1240
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1195 AGGAGATCTTTTTTTAAACGGAGCTTTCTTCACACGTTCTGGATCAGGTCTTGGAGCTAG 1254
Query 1241 CTACGCTAGAGCTTCAAGTTTAGCAGCCAAGTCATCATCACTTGTTGGCGTCATCACCTA 1300
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1255 CTACGCTAGAGCTTCAAGTTTAGCAGCCAAATCATCATCTCTTGTTGGCGTCATTACCTA 1314
Query 1301 CAATGCCGGTGCTCTTAATTGCAGAGGTGGTCGCCGGTGTTAATAGTTACTAATTTTTAT 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1315 CAATGCCGGTGCTCTTAATTGCAGAGGTGGTCGCCGGTGTTAATAGTTACTAAAGTCTAT 1374
Query 1361 CTTCTTTTGGTTTCTTGCATTATACATGGCAATAGCACTATTGAATGTCGAGGCTTGATT 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 CTTCTTTTGGTTTCTTGCATTATACATGGCAATAGCACTATTGAATGTCGAGGCTTGATT 1434
Query 1421 TAAAACTGTCTCAACTGTACTATAAAGTTGTAATGATTTGTTTCACCGCCAATTATTGAT 1480
||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TAAAATTGCCTCAACTGTATTATAAAGTTGTAATGATTTGTTTCACCGCCAATTATTGAT 1494
Query 1481 GTATCTATAAAAGCAAACAAAGTTGGAACTCTTCCTT 1517
|||||||||||||||||||||||||||||||| ||||
Sbjct 1495 GTATCTATAAAAGCAAACAAAGTTGGAACTCTCCCTT 1531
> AT3G07010.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2212728-2216483 REVERSE LENGTH=1673
Length=1673
Score = 1074 bits (581), Expect = 0.0
Identities = 983/1175 (84%), Gaps = 36/1175 (3%)
Strand=Plus/Plus
Query 188 TGAACAGGCAGTTGAGAATCCAGAGGAAGTAGCTGCCATGGTGGACATGAGCATTCGAAA 247
|||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 273 TGAACATGCAGTTGAGAACCCAGATGAAGTCGCTGCCATGGTGGACATGAGCATTCGAAA 332
Query 248 CAGCACAGAACGAAGAAAATTAGGATACTTCTCATGTTCAACCGGAAATCCAATCGACGA 307
||||||||| || |||| |||||| |||||||| || | ||||| || |||||||||||
Sbjct 333 CAGCACAGAGCGGAGAAGATTAGGTTACTTCTCCTGCGCCACCGGCAACCCAATCGACGA 392
Query 308 CTGTTGGCGTTGTGATCGGAGATGGCAATCT-CGGCG-AAAAGCTTTAGCCAATTGCGCA 365
|| |||||||| || || | ||||| | || || || ||| | ||||||| ||||| ||
Sbjct 393 TTGCTGGCGTTGCGACCGCAAATGGC-AGCTCCGTCGCAAACG-TTTAGCCGATTGCTCA 450
Query 366 ATCGGATTCGGTCGAAACGCAATCGGAGGCCGAGACGGTCGTTACTACGTCGTAAGCGAC 425
|||||||| || || ||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 451 ATCGGATTTGGCCGCAACGCAATCGGAGGCCGCGACGGTCGTTTCTACGTCGTAACCGAC 510
Query 426 CC---AAACGACGATAACCCGGTTAA-CCCTAAACCGGGAACATTACGTCACGCAGTAAT 481
|| | |||||||| ||| ||||| ||| | |||||||||| | |||||||| || ||
Sbjct 511 CCTGGAGACGACGAT--CCC-GTTAATCCC-ATACCGGGAACACTCCGTCACGCCGTGAT 566
Query 482 TCAAGAAGAACCACTATGGATTGTCTTTAAACGTGACATGGTCATAACATTAAAAG-AAG 540
|||||| |||||||| ||||| |||| ||||| |||||||| ||||| || ||| |||
Sbjct 567 TCAAGACGAACCACTCTGGATCATCTTCAAACGCGACATGGTTATAACCTT-GAAGCAAG 625
Query 541 AACTAATCATGAACAGTTTCAAAACAATCGATGGTCGTGGTGTGAATGTTCACATAGCTA 600
| || ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 626 AGCTGATCATGAACAGCTTCAAAACCATCGATGGTCGTGGTGTCAATGTTCACATCGCTA 685
Query 601 ATGGTGCATGTATCACGATTCAGTTCGTGACTAACATTATCATTCATGGGATTCATATTC 660
|||| || ||| |||||||||| | ||| || |||||||| | |||||||||||| | |
Sbjct 686 ATGGAGCTTGTCTCACGATTCAATACGTTACGAACATTATTGTCCATGGGATTCATGTCC 745
Query 661 ATGATTGT-AGACCAACTGGTAACGCTATGGTTAGAAGCTCTCCTTCACATTAT-GGTTG 718
|||| ||| || || || |||||||||||||||||||||||||| || |||||| ||||
Sbjct 746 ATGACTGTAAG-CCTACGGGTAACGCTATGGTTAGAAGCTCTCCGTCCCATTATGGGTT- 803
Query 719 GAGAACTATGGCTGATGGAGATGGGATTTCGATTTTCGGGTCGAGTCATATTTGGATTGA 778
||| | ||||||||||| || | ||| |||||||| || ||||||||||| ||||||||
Sbjct 804 TAGATCAATGGCTGATGGTGACGCGATCTCGATTTTTGGATCGAGTCATATCTGGATTGA 863
Query 779 TCATAATTCGCTTTCGAATTGTGCTGATGGGCTTATTGATGCTGTTATG-GCTTCTACTG 837
||| ||||||||||| |||||||||||||| ||| |||| ||||||||| || || || |
Sbjct 864 TCACAATTCGCTTTCTAATTGTGCTGATGGACTTGTTGACGCTGTTATGAGC-TCCACCG 922
Query 838 CTATTACTATCTCCAATAATTACTTCACACACCACAATGAGGTTATGTTATTGGGACATA 897
| |||||| |||| || |||| |||||| |||||||||||||||||||| ||||| ||||
Sbjct 923 CCATTACTGTCTCAAACAATTTCTTCACCCACCACAATGAGGTTATGTTGTTGGGGCATA 982
Query 898 GTGATACCTATACAAGGGATAAGGTTATGCAAGTTACAATTGCTTATAATCATTTCGGTG 957
||||| | || ||||| || ||||| |||||||||||||||||||| || ||||| ||||
Sbjct 983 GTGATTCATACACAAGAGACAAGGTGATGCAAGTTACAATTGCTTACAACCATTTTGGTG 1042
Query 958 AAGGTCTT-ATTCAGAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTAGTGAACAAT 1016
||||| || || |||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1043 AAGGT-TTAATCCAGAGAATGCCAAGATGTAGGCATGGATATTTCCATGTAGTTAACAAT 1101
Query 1017 GACTATACGCATTGGGAAATGTATGCAATCGGTGGCAGTGC-GAGTCCTACCATTAACAG 1075
||||| || |||||||||||||||||||| ||||| ||||| | |||| ||||| |||||
Sbjct 1102 GACTACACTCATTGGGAAATGTATGCAATTGGTGGTAGTGCTG-GTCCAACCATCAACAG 1160
Query 1076 CCAAGG-AAACAGATATCTCGCCCCGAG-AAACCGGTTTGCGAAAGAGGTAACAAAGAGA 1133
|| || || | ||| ||| || || || |||| ||||| || ||||| || ||||||
Sbjct 1161 TCAGGGCAATC-GATTTCTTGCTCC-AGTCAACCCATTTGCTAAGGAGGTGACTAAGAGA 1218
Query 1134 GACTATGCAGG-GCAATGGCAATGGAGGCATTGGAATTGGAGATCAGAAGGAGATCTTTT 1192
|| || |||| | ||| | |||||| ||| |||||||||||||||||||||||||||||
Sbjct 1219 GAGTACACAGGAG-AATCGAAATGGAAGCACTGGAATTGGAGATCAGAAGGAGATCTTTT 1277
Query 1193 CTTAAACGGAGCATTCTTCACACGTTCTGGATCAGGA-CTTGGAGCGAGCTACGCTAGAG 1251
||||||||||||||| ||||||||||||||| | ||| || ||||| | ||| || ||||
Sbjct 1278 CTTAAACGGAGCATTTTTCACACGTTCTGGAGCTGGAGCT-GGAGCCAACTATGCCAGAG 1336
Query 1252 CTTCAAGTTTAGCAGCCAAGTCATCATCACTTGTTGGCGTCATCACCTACAATGC-C-GG 1309
|||| |||||| ||||||| ||||| ||||| || ||| ||| |||| | | | | ||
Sbjct 1337 CTTCGAGTTTATCAGCCAAATCATCCTCACTCGTCGGCACCATGACCT-CT-TACTCAGG 1394
Query 1310 TGCTCTTAATTGCAGAGGTGGTCGCCGGTGTTAAT 1344
||||||||| ||||||| ||||| || |||||||
Sbjct 1395 TGCTCTTAACTGCAGAGCCGGTCGTCGATGTTAAT 1429
> AT5G55720.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:22556047-22557725 FORWARD LENGTH=1408
Length=1408
Score = 148 bits (80), Expect = 1e-34
Identities = 278/369 (75%), Gaps = 32/369 (9%)
Strand=Plus/Plus
Query 732 GATGGAGATGGGATTTCGATTTTCG-G-GTCGAGTCATATTTGGATTGATCATAATTCGC 789
||||||||||| || ||||| |||| | ||||| ||||||||||||||||| | ||
Sbjct 565 GATGGAGATGGAATATCGATATTCGAGTCTCGAG--ATATTTGGATTGATCATTGTACG- 621
Query 790 TT-TCGAATTG-TGCTGATGGGCTTATTGATGCTGT-TATGGCTTCTACTGCTATTACTA 846
|| ||| || | | ||||||||||||||||| || |||| || || | ||| || |
Sbjct 622 TTAGAGAAATGTTAC-GATGGGCTTATTGATGCGGTGAATGG-ATCCACGGATATAACGA 679
Query 847 TCTCCAATAATTAC-T-TCACACACCACAATGAGGTTATG-TTATTGGGACATAGTGAT- 902
| || |||| |||| | | | | || ||||| || ||| || ||||| |||||||||
Sbjct 680 TTTCGAATAGTTACATGT-TGA-ATCATAATGAAGTCATGCTT-TTGGGCCATAGTGATG 736
Query 903 ACCTATACAAGG-GATAAGGTTATGCAAGTTACAATTGC-TTATAATC-ATTTCGGTGAA 959
| ||| | || ||| || ||||| |||||| || || || ||| | |||| ||||||
Sbjct 737 A-GTATTC-CGGTGATCGGGATATGCGAGTTACGATCGCGTT-TAA-CTATTTTGGTGAA 792
Query 960 GGTCTTATTCAGAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTAGTGAACAATGAC 1019
|| ||| | || |||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 793 GGACTTGTCCAAAGAATGCCAAGGTGTAGGCATGGATATTTTCACATAGTGAATAAC-AT 851
Query 1020 T-ATAC-GCATTGGGAA-ATGTATGCAATCGGTGGCAGTGCGAGTCCTACCAT-TAACAG 1075
| ||| | | ||| || |||||||| || ||||| ||||| | ||| || || | ||
Sbjct 852 TTATAGAG-ACTGG-AAGATGTATGCTATTGGTGGAAGTGCTAATCCAACGATCTTT-AG 908
Query 1076 CCAAGGAAA 1084
|||||||||
Sbjct 909 CCAAGGAAA 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74849012595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5