BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495005 Length=699 Score E Sequences producing significant alignments: (Bits) Value AT5G49480.1 | Symbols: ATCP1, CP1 | Ca2+-binding protein 1 | ch... 1040 0.0 > AT5G49480.1 | Symbols: ATCP1, CP1 | Ca2+-binding protein 1 | chr5:20070743-20071638 FORWARD LENGTH=896 Length=896 Score = 1040 bits (563), Expect = 0.0 Identities = 662/706 (94%), Gaps = 22/706 (3%) Strand=Plus/Plus Query 1 AAAGCTTCCTTCACAATCTCAAAAGCCA-TTTTCAAATTTCAAAAAACTCAGAGAGATCA 59 |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 11 AAAGCTTCCTTCACAATCTCAAAAGCCATTTTTCAAATTTC---AAACTCAGAGAGA--G 65 Query 60 AGCGATGTGTCCTTCCGGTAGAATCGCGATTCCGATAACCACCACCGCGAATTCAGATTT 119 || |||||||||||| |||||||||||||||||||||||||||||||||||| || |||| Sbjct 66 AGAGATGTGTCCTTCTGGTAGAATCGCGATTCCGATAACCACCACCGCGAATCCAAATTT 125 Query 120 CCGTCCAGCTTTCGAAATCATCGACACAGATCACGACGGTAAAATCAGCAGCGACGATCT 179 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126 CCGACCAGCTTTCGAAATCATCGACACAGATCACGACGGTAAAATCAGCAGCGACGATCT 185 Query 180 CCGTGCATTCTACGCCGGAATCACTTCCGGTGAAAACAACGACGAGGCGATGATCGGAAC 239 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 186 CCGTGCATTCTACGCCGGAATCCCTTCCGGTGAAAACAACGACGAGACGATGATCGGAAC 245 Query 240 GATGATATCAGTAGCGGACGCGAACAAAGACGGATTCGTTGAGTTCGATGAGTTCGAGAA 299 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 246 GATGATATCAGTAGCGGACGCGAACAAAGACGGATTCGTTGAGTTCGATGAATTCGAGAA 305 Query 300 AGTTCTAGAAACGGCGCCGTTGTTGTGTAGATCTGGTAACGGAGGAGACGATGGATTGAT 359 ||||||||||||| ||||| | || | ||||||||||||||||||||||||||||||||| Sbjct 306 AGTTCTAGAAACGACGCCG-T-TT-TCTAGATCTGGTAACGGAGGAGACGATGGATTGAT 362 Query 360 GAAAGATGTGTTTAAGGTGATGGATAAAGACGGAGATGGGAGATTGAGTTACGGAGATCT 419 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 363 GAAAGATGTGTTTAAGGTGATGGATAAAGACGGAGATGGGAGACTGAGTTACGGAGATCT 422 Query 420 GAAAAGTTATATGGATTCGGCTGGTTTAGCTGCTT-CCGATGATGAAATCAAAGCTATGA 478 ||| |||||||||||||||||||||||||||| | |||| |||||||||||| |||||| Sbjct 423 GAAGAGTTATATGGATTCGGCTGGTTTAGCTG-TAACCGACGATGAAATCAAATCTATGA 481 Query 479 TTCGATTAGCCGGTGGTGATTTAAACGACGGCGTTTCGTTTGACGGTTTGCTTAAGATTT 538 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| | Sbjct 482 TTCGATTAGCCGGTGGTGATTTAAACGACGGCGTTTCGTTCGACGGTCTGCTTAAGATCT 541 Query 539 TTGGGTGTTGaaaaaaaaa-TT-GttttttttGACACCGCACATTTTCCAACTTTATTTA 596 ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 542 TTGGGTGTTGAAAAAAAAAGTTCGTTTTTTTTGACACCGCACATTTTCCAACTTTATTTT 601 Query 597 -T--CTCAGCtttgtttgtttgtttgtttgcagaagtgtatttgtgtccacccagatttt 653 | ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 GTTTCTCAG-TTT-T--GTTTGTTTGTTTGCAGAAGTGTATTTGTGTCCACCCAGATTTT 657 Query 654 gttttctctgttgttATAAAAATGTGAGAAAATTAATGTTGGAACA 699 ||||| | ||||||||||||||||||||||| ||||||||||||| Sbjct 658 GTTTTAT--GTTGTTATAAAAATGTGAGAAAACTAATGTTGGAACA 701 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33857815078 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5