BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495066
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50100.1 | Symbols: | Putative thiol-disulphide oxidoreduct... 1293 0.0
> AT5G50100.1 | Symbols: | Putative thiol-disulphide oxidoreductase
DCC | chr5:20371853-20373441 FORWARD LENGTH=977
Length=977
Score = 1293 bits (700), Expect = 0.0
Identities = 784/824 (95%), Gaps = 7/824 (1%)
Strand=Plus/Plus
Query 1 ATGGCAACGAGAGGAGC---TGCTGCTGCTGCATCCACAATATGGAAGCACCGAAGAAAC 57
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 64 ATGGCAACGAGAGGAGCTGTTGCTGCTGCTGCATCCACAATATGGAAGCACCGAAGAAAC 123
Query 58 CCTTCTCTTCGATCATTATCAAACCATTTCAATCCCAATTTCAATCACAGAATCATCCCA 117
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 124 CCTTCTCTTCGATCATTATCTCGCCATTTCAATCCCAATTTCAATCATAGAATCATCCCA 183
Query 118 ACCGGGTTTAAATATCAAGTTAGAGCGATACAAGGAACAAGTACTGATCCTGTTATTACA 177
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 184 ACAGGGTTTAAATATCAAGTTAGGGCGATACAAGGAACAAGTACTGATCCTGTCATTACA 243
Query 178 CCATTGAAGAACAGAGATGAACCAAAACCACAAAATTGGAAAATCAAAATGCTTTATGAT 237
||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 244 CCATTAAAGAACAGAGAGGAACCAAAGCCACAAAACTGGAAAATCAAAATGCTTTATGAT 303
Query 238 GGAGATTGCCCTCTCTGTATGCGTGAGGTTAATATGCTTATGGAAAGGAATGAAAAACAT 297
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GGAGATTGTCCTCTCTGTATGCGTGAGGTTAATATGCTTATGGAAAGGAATGAAAAACAT 363
Query 298 GGAACTATAAAGTTCGTCGACATAAGTTCAAATGATTATTCTCCGGAAGATAATCAAGGG 357
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 364 GGAACTATAAAGTTTGTCGACATAAGTTCAAATGATTATTCCCCGGAAGATAATCAAGGG 423
Query 358 CTTGATTACAAAACAGTAATGGGGCAGATTCATGCTATTCAATCTGATGGTAACGTCG-T 416
||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| | |
Sbjct 424 CTTGATTACAAAACAGTGATGGGGCAGATTCATGCCATTCAGTCTGATGGTAACGTTGTT 483
Query 417 AACAGGTGTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGACTTGGTTGGGTTTACAC 476
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 484 AA-GGGTGTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGGCTTGGATGGGTTTACAC 542
Query 477 TATCACCAAATTTGAACCAATAGGGAAGTTAGCAGATGTTGTGTATGATGTATGGGCTAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TATCACCAAATTTGAACCAATAGGGAAGTTAGCAGATGTTGTGTATGATGTATGGGCTAA 602
Query 537 ATATCGACTTCAAGTCACAGGGAGGCCATCTTTAGAAGCTATTCTTGAAGCAAGAAAGAA 596
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 603 ATACCGACTTCAAGTCACAGGGAGGCCATCTATAGAAGCTATTCTTGAAGCAAGAAAGAA 662
Query 597 AGATAAGGTAGAGACATGTGGTGAAAGCAAGGACTGCAAGATATGATTTTTCTTCATACT 656
||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||
Sbjct 663 AGATAAGGTAGAGACATGTGGTGAAAGCAAGAACTGCAAGATATGAATTTTCTTTATACT 722
Query 657 CTTTGAATTGTTACAAAATACCAAAACCAGTTTGGACTTAGAAATTATCTTTATGTGACT 716
|||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |
Sbjct 723 CTTTGAATTGTTACAAAATACCAAAACCAGTTTGGAGTTACAAATTTTCTTTATGTGAGT 782
Query 717 GTGAGAATTTGTATAAATATGATACATAAGCCCCATTACATTAGCCAAATCATCCTGATG 776
||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 783 GTGAGAATTTGTATATATATGATACACA-GCCCCATTACATTAGCCAAATCATCCTGATG 841
Query 777 ATACATTTATACACATGAATATTTTCAGCAAATTTTGAAACTGT 820
||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 842 ATACATT-ATACACATGAATAATTTCAGCAAATTTTGAAACTGT 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5