BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495077 Length=939 Score E Sequences producing significant alignments: (Bits) Value AT5G50200.3 | Symbols: WR3 | nitrate transmembrane transporters... 1480 0.0 > AT5G50200.3 | Symbols: WR3 | nitrate transmembrane transporters | chr5:20436180-20437726 FORWARD LENGTH=952 Length=952 Score = 1480 bits (801), Expect = 0.0 Identities = 895/941 (95%), Gaps = 3/941 (0%) Strand=Plus/Plus Query 1 GATACAATTAGAATATGTAGAGTATCTTGTAGGTGACGTAACCATGAAATATAGAATTGT 60 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 1 GATACAATTACAATATGTAGAGTATCTTATAGGTGACGTAACCATGAAATATAGAATTCT 60 Query 61 TTGGAATCTGAAACTGAATTATTCAGTTGATAAATGATAAAACAAATACTCATATCTCAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTGGAATCTGAAACTGAATTATTCAGTTGATAAATGATAAAACAAATACTCATATCTCAT 120 Query 121 CCTTTGGCATGGCGATTCACAAGATCCTCTTCGCTTCACTTCTCATATGCTCTCTGATCC 180 |||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||| Sbjct 121 CCTTTGGCATGGCGATCCAGAAGATCCTCTTTGCTTCACTTCTCATATGCTCACTGATCC 180 Query 181 AATCCAGCCATGGGGCGGAAAAAGTAAGACTCTTCAAAGAGCTGGACAAAGGTGCTCTTG 240 |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 181 AATCCATCCACGGGGCGGAAAAAGTAAGACTCTTCAAAGAGCTGGACAAAGGTGCACTTG 240 Query 241 ATGTCACCACTCAACCCAGTCGACAAGGAGAC-GGTGTTGTTTTGGATGCCGGCAAGGAT 299 ||||||||||| ||||||| ||| ||||| | ||||||||||||||||||||||||||| Sbjct 241 ATGTCACCACTAAACCCAGCCGAGAAGGA-CCAGGTGTTGTTTTGGATGCCGGCAAGGAT 299 Query 300 ACATTGAACATTACATGGAAGCTAAGCGCTATTGGGTCTAAAAGAGAGGCTGAATTTAAG 359 || |||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| Sbjct 300 ACGTTGAACATTACATGGACGCTAAGCTCGATTGGGTCTAAAAGAGAGGCTGAATTTAAG 359 Query 360 ATCATCAAAGTAAAGCTATGCTACGCTCCACCTAGCCAACTTGACCGACCATGGCGCAAG 419 ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 360 ATCATCAAAGTTAAGCTATGCTACGCTCCACCTAGCCAAGTTGACCGACCATGGCGCAAA 419 Query 420 ACCCATGACGAGCTCTTCAAAGACAAGACCTGCCCACACAAGATCATAGCCAAGCCTTAT 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 ACCCATGACGAGCTCTTCAAAGACAAGACCTGCCCACACAAGATCATAGCCAAGCCTTAT 479 Query 480 GACAAAACCCCTCAATCAACTGTTTGGACCCTTGAGCGTGACATCCCCACAGGTACCTAC 539 |||||||| | |||||||||| |||||| |||||||||||||||||||| || |||||| Sbjct 480 GACAAAACACTTCAATCAACTACTTGGACTCTTGAGCGTGACATCCCCACCGGAACCTAC 539 Query 540 TTCGTTCGTGCCTACGCAGTTGATGCCATTGGCCATGAAGTTGCCTATGGACAGAGCACC 599 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TTCGTTCGTGCCTACGCGGTTGATGCCATTGGCCATGAAGTTGCCTATGGACAGAGCACC 599 Query 600 GACGATGCCAAGACAACCAATCTCTTCAGCGTTCAGGCTATCAGTGGCCGCCACACGTCC 659 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 600 GACGATGCCAAGAAAACCAATCTCTTCAGCGTTCAGGCTATCAGTGGCCGCCACGCGTCC 659 Query 660 TTAGATATTGCCTCCATCTGCTTCAGCGTCTTCTCCGTGGTGGCTCTTGTCGTCTTCTTT 719 ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| Sbjct 660 CTAGATATTGCCTCCATCTGTTTCAGTGTCTTCTCCGTCGTGGCTCTTGTCGTCTTCTTT 719 Query 720 ATAAACGAGAAGAGGAAGGCCAAGATAGAGCAAAGCAAATGAGTCGTTTACTTTGCGTAT 779 | || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GTCAATGAGAAGAGGAAGGCCAAGATAGAGCAAAGCAAATGAGTCGTTTACTTTGCGTAT 779 Query 780 TTGTGACGTTGAACCCaaaaaaaGTTGACTTTGAACTT-CTTGGTTACCAATTCCTTTTG 838 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 780 TTGTGACGTTGAACCCAAAAAAAGTTGACTTTGAACTTTCTTGTTTACCAATTCCTTTTG 839 Query 839 TCTTGTTGCTTACTTCTTCTTTCCTATATGCTTTTATTTATGTGTTTGTACAATTAAGCC 898 ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 840 TCTTGTTGCACACTTCTTCTTTCTTATATGCTTTTATTTATGTGTTTGTACAATTAAGCC 899 Query 899 ATTGATATGGAGCAAAACTAATCCTACGGTGGTGATGCGTT 939 ||||||||||| ||||||||||||||||||||||||||||| Sbjct 900 ATTGATATGGAACAAAACTAATCCTACGGTGGTGATGCGTT 940 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45914010358 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5