BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495112
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50450.1 | Symbols: | HCP-like superfamily protein with MYN... 1615 0.0
> AT5G50450.1 | Symbols: | HCP-like superfamily protein with MYND-type
zinc finger | chr5:20543310-20544753 REVERSE LENGTH=1275
Length=1275
Score = 1615 bits (874), Expect = 0.0
Identities = 1016/1081 (94%), Gaps = 24/1081 (2%)
Strand=Plus/Plus
Query 1 ATGACGCATCTCAACAAAAAACAGAGGTTAGAGAAGAACCATAACCAT--TTTG------ 52
||||||||||||||||||||||||||||||||||| ||||||||| || | ||
Sbjct 56 ATGACGCATCTCAACAAAAAACAGAGGTTAGAGAATAACCATAACAATACTGTGAACAAC 115
Query 53 -A---C--A-ACTTACATGACGATCTCATCATCTCTATCCTCCGTAAACTCGCTTCCTCC 105
| | | |||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 116 CATTTCGAAGACTTACATGACGATCTCATCATCTCTATCCTCCGCAAACTCGCTACCTCC 175
Query 106 GCTTCTTCTCCTTCCGATTTCCTCACCGTACTCTCCACATGCAAGAGATTGAATCGGTTA 165
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 176 GCTTCTTCTCCTTCCGATTTCCTCACCGTTCTCTCCACATGCAAGAGATTGAATCGGTTA 235
Query 166 GGTTTACAACCTCTGGTTTTATCAAAAGCCGGTACTCAAACCCTAGCCGTCACGGCGGAG 225
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 236 GGATTACATCCTCTGGTTTTATCTAAAGCCGGTACTCAAACCCTAGCCGTCACGGCGGAG 295
Query 226 AAATGGTCAGATTCTTCTCATAAATTCCTCAAACTCTGTGTTAATGCCGGAAACATCGAC 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AAATGGTCAGATTCTTCTCATAAATTCCTCAAACTCTGTGTTAATGCCGGAAACATCGAC 355
Query 286 GCTTCTTACGCTCTCGGAATGATCCGATTTTACTGTCTTCAAAATCCAGTGAGCGGCGCG 345
||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 356 GCTTCGTACTCTCTCGGAATGATCCGATTTTACTGTCTACAAAATCCAGTGAGCGGCGCG 415
Query 346 TCTTTAATGGCTAAAGCCGCGATTAAATCTCACGCGCCGGCGCTTTATTCGTTATCGGTG 405
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 416 TCATTAATGGCTAAAGCGGCGATTAAATCACACGCGCCGGCGCTTTATTCGTTATCGGTG 475
Query 406 ATTCAGTTTAACGGAAGCGGCGGTTCAAAAACCGATAAGAACCTACGCGCCGGCGTTACT 465
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 476 ATTCAGTTTAACGGAAGCGGCGGTTCAAAAACCGATAAGAATCTACGCGCCGGCGTTGCT 535
Query 466 CTTTGTGCACGCTCTGCTTATTTAGGCCACGTCGATGCGTTACGAGAGCTTGGTCACTGT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTTTGTGCACGCTCTGCTTATTTAGGCCACGTCGATGCGTTACGAGAGCTTGGTCACTGT 595
Query 526 CTTCAAGACGGTTACGGTGTTCCTCGTGACGTCTCTGAAGGTCGTCGTCTTTTGATTCAA 585
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 596 CTTCAAGACGGTTACGGTGTTCCTCGTGACGTCTCCGAAGGTCGTCGTCTTTTGATTCAA 655
Query 586 GCTAACGCGCGTGAGCTCGCGTGTTCTCTTCGCTCTTACCTCTCTCTGAAATGTGG--A- 642
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
Sbjct 656 GCTAACGCGCGTGAGCTCGCGTGTTCTCTACGCTCTTACCTCTCTCTGAAATCTGGGGAC 715
Query 643 GA---CGAGATCTTAACTGATTTAAGCGTGGTTCCGGTTCAGGAGATCCATCCGGTTAAC 699
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 716 GAGAACGAGACCTTAACTGATTTAAGCGTGGTTCCGGTTCAGGAGATTCATCCGGTTAAC 775
Query 700 CGGTTTTTGAAGGAGTGGTTTAGTTCGGGTCGGGTTGATTTAGCGGATGGGTTAAGGATG 759
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 776 CGGTTTTTAAAAGAGTGGTTTAGTTCGGGTCGGGTTGATTTAGCGGAAGGGTTAAGGATG 835
Query 760 TGTTCGCATGGTGGTTGTGGGAGACCGGAGACTCGGGCTCATGAGTTCCGGCGATGTTCT 819
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 836 TGTTCGCATGGTGGTTGTGGAAGGCCGGAGACTCGGGCTCATGAGTTTCGGCGATGTTCT 895
Query 820 GTTTGTGGGAAGGTGAATTATTGCTCACGTGGTTGTCAGGCGTTGGATTGGAGAGCCAAG 879
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 896 GTTTGTGGGAAGGTTAATTATTGCTCGCGTGGTTGTCAGGCGTTGGATTGGAGAGCGAAG 955
Query 880 CATAAGATTGAATGTACGCCGTTGGATTTGTGGATTGCGGTACCGGCGGAGATTGGCGTC 939
|||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||| |
Sbjct 956 CATAAGGTTGAATGTACGCCGTTGGATTTGTGGGTTGCGGCAGCGGCGGAGATTGGCGAC 1015
Query 940 GACGGTGAAGCGGTGGCGGTGGAGATTGATGATAATCATGGTGAGCGGTAACGGCTCTGA 999
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1016 GACGGTGAAGCGGTGGCGGTGGAGATTGATGATAATCATGGTGAGCGGTAACGGCTCTAA 1075
Query 1000 CGCTTTTT---AAGTAAATGACTAAAATGCCAAAAGTTTCTTTGACTGTTTAGttttttt 1056
|||||||| ||| |||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 1076 CGCTTTTTTTCAAGGAAATGACTGAAATGCCAACAGTTTCTTTGACTGTTGAGTTTTTTT 1135
Query 1057 t 1057
|
Sbjct 1136 T 1136
Score = 82.4 bits (44), Expect = 9e-15
Identities = 74/86 (86%), Gaps = 11/86 (13%)
Strand=Plus/Plus
Query 1064 TCTTAATTAATTAG-TTT-G-----GGCGTTTCTGAATTC-TCTGATACTGAAA-TGACA 1114
|||||||||||||| ||| | |||||||||||| || ||||||||| ||| || ||
Sbjct 1186 TCTTAATTAATTAGTTTTGGCTAATGGCGTTTCTGAA-TCTTCTGATACT-AAACTGGCA 1243
Query 1115 TGTTATTTTAAATAATATAGTTTTTT 1140
||||||||||||||||||||||||||
Sbjct 1244 TGTTATTTTAAATAATATAGTTTTTT 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5