BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495134 Length=667 Score E Sequences producing significant alignments: (Bits) Value AT5G50720.1 | Symbols: ATHVA22E, HVA22E | HVA22 homologue E | c... 904 0.0 > AT5G50720.1 | Symbols: ATHVA22E, HVA22E | HVA22 homologue E | chr5:20633193-20634552 REVERSE LENGTH=650 Length=650 Score = 904 bits (489), Expect = 0.0 Identities = 616/672 (92%), Gaps = 30/672 (4%) Strand=Plus/Plus Query 1 AACAAGAGCGTCCTTTGATTGGTTTTGGATTTTGTTGTGTTCCTCTCAAAATGACAAAAT 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AACAAGAGCGTCCTTTGATTGGTTTTGGATTTTGTTGTGTTCCTCTCAAAATGACAAAAC 60 Query 61 TATGGAC-TCTTCTCTCTGCTCTTCATTCCCTCGCTGGACCCGTGGTGATGCTGCTTTAC 119 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 TATGGACTTC-TCTCTCTGCTCTTCATTCCCTCGCTGGACCCGTGGTGATGCTGCTCTAT 119 Query 120 CCGTTATATGCGTCGGTGATAGCAATAGAGAGCCCATCAAAAGTAGATGACGAGCAATGG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CCGTTATATGCGTCGGTGATAGCAATAGAGAGCCCATCAAAAGTAGATGACGAGCAATGG 179 Query 180 CTTGCTTATTGGATTCTCTACTCTTTCCTTACTCTATCAGAACTCATCCTTCAATCTCTC 239 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 180 CTTGCTTATTGGATTCTCTATTCTTTCCTTACTCTATCAGAACTCATCCTTCAATCTCTC 239 Query 240 CTAGAGTGGGTACCGATATGGTACACGGCTAAGCTAGTGTTTGTGGCATGGTTGGTTCTG 299 ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 240 CTAGAGTGGATACCGATATGGTACACGGCGAAGCTAGTGTTTGTGGCATGGTTGGTTTTA 299 Query 300 CCGCAATTTAGAGGGGCTGCTTTCATATACAACAG-GATCGTGAGGGAACAGTTCAAGAA 358 || ||||||||||| |||||||| |||||||||| | |||||||||||||||||||||| Sbjct 300 CCACAATTTAGAGGAGCTGCTTTTATATACAACAAAG-TCGTGAGGGAACAGTTCAAGAA 358 Query 359 GTATGGCATCCTCAAACCTAAGGTAGAACATCAGGCTGAGTGAGTCAAAAAGAAG-ATGG 417 ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | | || Sbjct 359 GTACGGCATCCTCAAACCTAAGGTAGAGCATCAGGCTGAGTGAGTCAAAAAGA-GCAGGG 417 Query 418 GACAAAAGAGGGGTTCACTGTTGGGGCCTCCAGTTTCTAATCT-TTTATGCTTTTTCTCT 476 |||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||||| | Sbjct 418 GACACAAGAGGGCTTCACTGTTGGGGTCTCCAGTTTCTAATCTCTTTATGCTTTTTCTAT 477 Query 477 TTTGTCTTAATTCTCTTTTGATATACGGAAAAATGGGTTTAGATGTTGACTATATGAGTT 536 ||||||||| ||||||||||||||||||||||||||| || | | | || ||| | Sbjct 478 TTTGTCTTATTTCTCTTTTGATATACGGAAAAATGGGGTT-G-T-T---CT-TAT---T- 526 Query 537 CTTATGAGCCTAGCTCCTGCTTGAATGTATATGAAAAGAACTTTTATTCGACGTTAAAAT 596 |||||||| || |||||||||||| ||||||| |||||||||||||||||| | Sbjct 527 ---ATGAGCCT--CT---GCTTGAATGTAT--GAAAAGACCTTTTATTCGACGTTAAACT 576 Query 597 ATTATATTAAGAGATTATAAATTT-TAAATCTTGTGTTGCCACTTCTTAGTCTTTCAAGA 655 |||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||| Sbjct 577 ATTATATTAA-AGATTAAAAAATTGTAAATCTTGTGTTGCCACTTCTTAGTCTTTCAAGA 635 Query 656 CATCATTGCCTT 667 ||||||||||| Sbjct 636 TATCATTGCCTT 647 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32250322374 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5