BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495136
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50740.3 | Symbols: | Heavy metal transport/detoxification ... 1441 0.0
> AT5G50740.3 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:20635866-20637977 REVERSE LENGTH=997
Length=997
Score = 1441 bits (780), Expect = 0.0
Identities = 874/920 (95%), Gaps = 4/920 (0%)
Strand=Plus/Plus
Query 42 GGAAGATAAGAAAATGGAGGagaagaaagctgaagagcctcaagtgaaatcagaagataa 101
|||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||
Sbjct 16 GGAAGATAAGAAAATGGAGGAGAAGAAATCTGAAGAGCCACAAGCGAAATCAGAAGATAA 75
Query 102 gaaaccagcagaagaagagaagaagaaagagcctcaagagaTTGTGCTTAAGATTTTTAT 161
|||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 76 GAAA-C--CAGAAGAAGAGAAAAAGAAAGAACCTCAAGAGATTGTGCTTAAGATTTTTAT 132
Query 162 GCATTGTGAAGGTTGTGCTaaaaaaaTCCATAGATGTCTTAAAGGCTTTGAAGGAGTGGA 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 GCATTGTGAAGGTTGTGCTAAAAAAATCCATAGATGTCTTAAAGGCTTTGAAGGAGTGGA 192
Query 222 AGATGTAACTACTGATTGTAAAACTAGTAAAGTTGTGGTGAAAGGAGACAAGGCAGATCC 281
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 193 GGATGTAACTACTGATTGTAAGACTAGTAAAGTTGTGGTGAAAGGAGAGAAGGCAGATCC 252
Query 282 ATTGAAAGTGTTGCAAAGATTGCAGAGGAAGAGTCACCGTCAAGTGGAGCTTATCTCACC 341
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 253 ATTAAAAGTGTTGCAAAGATTGCAGAGGAAGAGCCATCGTCAAGTGGAGCTTATCTCACC 312
Query 342 AATTCCGGAGCCTAAACCAGTTTCCGATGTACCggagaaaaaggagaaggagaaacctaa 401
||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 313 GATTCCGGAGCCTAAACCGGTTTCTGATGAACCGGAGAAAAAGGAGAAGGAGAAACCTAA 372
Query 402 acctgaggagaaaaaagaagaggTAGTGACAGTGGTGCTGAGAGTTCACATGCATTGTGA 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 ACCTGAGGAGAAAAAAGAAGAGGTAGTGACAGTGGTGCTGAGAGTTCACATGCATTGTGA 432
Query 462 AGCATGTGCCATGGAGATTCAAAAGAGAATCATGAGAATGAAAGGAGTGGAGTCTGTGGA 521
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 433 AGCATGTGCCATGGAGATTCAAAAGAGGATCATGAGAATGAAAGGAGTGGAGTCTGTGGA 492
Query 522 ACCAGATTTTAAAGCATCACAAGTGAGTGTGAAAGGAGTTTTTACACCGGAAAAGCTAGT 581
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 493 ACCAGATTTTAAAGCATCACAAGTGAGCGTGAAAGGAGTTTTTACGCCGGAAAAGCTAGT 552
Query 582 TGAGTTCATTTACAAGAGAATCGGGAAGCACGCCGCGGTTGTCAAGCAAGACCCGCCGCC 641
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 553 TGAGTTCATTTACAAGAGAATCGGGAAGCATGCCGCGGTTGTCAAGCAAGATCCGCCGCC 612
Query 642 AAAACCACCGGagaaagaaaaagaaacgaaagacaaaggtgagaagaaaaaagaagaggg 701
|||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 613 AAAACCTCCGGAGAAAGAAAAAGAAACGAAAGACAAAGACGAGAAGAAAAAGGAAGAGGG 672
Query 702 acaacccaaagaaggaaaagaggccaaggaagaTGGTGGAGGAGGAGGTGCTAAAGGCGA 761
||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 673 ACAGCCCAAAGAAGGAAAAGAGGCCAAGGAAAACGGTGGTGGAGGAGGTGCTAAAGGCGA 732
Query 762 TGGTGCTGCCGCGGGGGAGGGGAACAAAGTTGTAGACCTAAAGAAGAACGAATATCAGTA 821
|||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct 733 TGGTGCTGCCGCGGAGGAGGGGAACAAAGTGGTAGACTTGAAGAAGAACGAATATCAGTA 792
Query 822 CCAGCCACCGAGGTATCCGGTGGAGATGTTTGCTTATCCACCGCAGATATTCAGTGATGA 881
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 793 CCAGCCACCGAGGTACCCCGTGGAGATGTTTGCTTATCCACCGCAGATATTCAGTGATGA 852
Query 882 GAACCCCAACGCTTGTACCATTATGTAATAAAACCGTCGGTTTAAAGGGTTGTAGGattt 941
|||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 853 AAACCCCAATGCTTGTACCATTATATAATAAAATCGTCGGTTTAAGGGGTTGTAGGATTT 912
Query 942 att-tatttttattttattt 960
|| | |||||| |||||||
Sbjct 913 GTTATTTTTTTACTTTATTT 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5