BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495147
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50840.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Taxilin (... 1831 0.0
> AT5G50840.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Taxilin
(InterPro:IPR019132); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes
- 9610 (source: NCBI BLink). | chr5:20685820-20688918 FORWARD
LENGTH=1480
Length=1480
Score = 1831 bits (991), Expect = 0.0
Identities = 1180/1268 (93%), Gaps = 25/1268 (2%)
Strand=Plus/Plus
Query 1 AAAAATGGAGTCACCGCACTCGAATCTGCTCCCTGAAGTCGATTCTTTACCCGATGGATT 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 80 AAAAATGGAGTCACCGCACTCGAATTTGCTCCCTGAAGTCGATTCTTTACCCGATGGATT 139
Query 61 CGTCGACGGCGCAACAGACCCGCCTCTCAATTCACCAAAAACCCAGGAAGAAAATTGTAT 120
|||||||||||||||||| |||||||||||||| || || ||||| | | || |
Sbjct 140 CGTCGACGGCGCAACAGAGCCGCCTCTCAATTCTCCCAAGACCCA-G--G--AA--G--- 189
Query 121 CACAACAACAACAAACCATGACACTGTTGCGATCGA-AAAAGCAGAGAAGCCGAGAACTT 179
| ||||||||||||||| |||||||||||||| |||| |||||||||| |||||||
Sbjct 190 ----A-AACAACAAACCATGAAACTGTTGCGATCGAGAAAA-CAGAGAAGCCAAGAACTT 243
Query 180 TTCCAGTTCCTTTGTGTGAAACAGATGGTAATGAAGATGACGAAGTAGATGACCTAATTC 239
|||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 244 TTCCGGTTCCGTTGTGTGAAACTGATGGTAATGAAGATGACGAAGTAGCTGACCTAATTC 303
Query 240 GAGAATCAGAGAAGCTTAGCTTAGAGGCAGAGTTAGAGCAGAAACAAGAAGAAACATCTA 299
|||||| || | ||||| ||| |||||| ||||||||| || ||||| | |||
Sbjct 304 AAGAATC----AATC-AAGCTT-GAGTTAGAGTTCGAGCAGAAAGAAAAAGAAGCTTCTC 357
Query 300 CTCCTGTTTCTCAAACATTATCAGAAGGGTCAAGTCAAAATCCAACCTTGTCTAAGGAAA 359
||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 358 CTCCTATTTCTCAAACATTGTCAGAAGGGTCAACTCAAAATTCAACCTTGTCTAAGGAAA 417
Query 360 TGGATTCACTCAAACCCAAAAAACAACAGGAGGTGGTTGAGAGCAAGCGTAAGGCTTCAA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 418 TGGATTCACTCAAACCCAAAAAACAACAGGAGGTGGTTGAGAGCAAGCGTAAGGGTTCAA 477
Query 420 AGAATATGTTCAAATCAGAGAAAGAGTTTTTGGAATTTATGCTTAAGTATCAGCAAGTTC 479
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 478 AGAATATGTTCAAATCAGAGAAAGAGTTTTTGGAATTTATGCTCAAGTATCAGCAAGTCC 537
Query 480 TCTCTGAAAGAGATTCTGCTATTACTGTTCGTGACAAGCTTGAATCACTTTGTAGAGAGT 539
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTTCTGAAAGAGATTCTGCTATTACTGTTCGTGACAAGCTTGAATCACTTTGTAGAGAGT 597
Query 540 TACAACGTCAAAACAAAATGTTGATGGAAGAGTGCAAGCGGGTGTCTACTGAGGGACAGA 599
|||||||||| ||||||||||| |||||||| |||||| |||| || |||||||||||||
Sbjct 598 TACAACGTCAGAACAAAATGTTAATGGAAGAATGCAAGAGGGTTTCAACTGAGGGACAGA 657
Query 600 CTTTAAGATCGGATTTATCGACAAAGTTCCAGGATGCAATTAA-GGATGTCAGCATTAAG 658
||||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||||
Sbjct 658 CTTTAAGATCGGATTTATCGACAAAGTTCCAGGATGCTA-TAATGGATGTGAGCATTAAG 716
Query 659 TTGGACGAGCAAAAGGATGAAAGCCTCACGCAACTAAAAGAAAACGAGATGTTGAGGACG 718
||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 717 TTGGACGAGCAAAAGAATGAAAGCCTCACGCAACTCAAAGAAAATGAGATGTTAAGGACG 776
Query 719 AAGTTGAAGCACCTGGCTGATCAATTTATGCTTTCAGAACAACAACATGAACAAAGATTG 778
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 777 AAGTTGAAGCACCTGGCTGATCAATTTATGCTTTCAGAACAACAACATGAGCAAAGGTTG 836
Query 779 AAGCAGAAAACACTTGAGCTACAGATCTCTGCTTTAAAAATTAAACAGCACGAGGAGAAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AAGCAGAAAACACTTGAGCTACAGATCTCTGCTTTAAAAATTAAACAGCACGAGGAGAAA 896
Query 839 CTCATCCATGAACAATCTCAGATGAAAGTTTACGCAGATCAAGTTTCTCAGCTTTTATCT 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 897 CTCATCCATGAACAATCTCAGATGAAAGTTTACGCAGATCAAGTTTCTCAGCTTTTGTCT 956
Query 899 ACTGAGAAAAATTTGCGGTTGCAGCTAACTGCTGATGGAGATAAATTCCAGCAGTTCCAG 958
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 957 ACTGAGAAAAATTTGCGGTTGCAGCTGACTTCTGATGGAGATAAATTCCAGCAGTTCCAG 1016
Query 959 GACGCATTGGTGAAGAGCAATGAGGTGTTTGAAACATTCAAACAAGAAATCGATAAGATG 1018
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GACGCGTTGGTTAAGAGCAATGAGGTGTTTGAAACATTCAAACAAGAAATCGATAAGATG 1076
Query 1019 TCAAAAGCAATCAAAGAACTTAGGAAAGAAAACGCATTCTTGAAGAGCAAAACTGAGAGG 1078
|||||||||||||||||||| || |||||||||||||||||||| | ||||||||||| |
Sbjct 1077 TCAAAAGCAATCAAAGAACTCAGAAAAGAAAACGCATTCTTGAAAAACAAAACTGAGAAG 1136
Query 1079 TCGGATATCACTCTCATAGAACTCGTTGAAGAGCGTGAAAGATTGAAGAAGCTGTTGGAG 1138
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1137 TCGGATATCACTCTCATAGAACTCGTCGAAGAGCGTGAAAGATTGAAGAAACTGTTGGAG 1196
Query 1139 AAGACAAAGAAACAAAAAGACAAGCTTGAATCGCTTTGCAGATCCCTTCAAGCTGAAAGA 1198
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1197 AAGACAAAGAAACAGAAAGACAAGCTTGAATCACTTTGCAGATCCCTTCAAGCTGAAAGA 1256
Query 1199 AAACAGAAGGAAACTAACAGTGCCGATTCTGCAGTTCAACCATGAACCAGAGAGAGACTA 1258
|||||||| |||||||||||| | |||||||| ||||||||||||| |||||||||||||
Sbjct 1257 AAACAGAAAGAAACTAACAGTACTGATTCTGCTGTTCAACCATGAAACAGAGAGAGACTA 1316
Query 1259 TGAATTCA 1266
||||||||
Sbjct 1317 TGAATTCA 1324
Score = 185 bits (100), Expect = 8e-46
Identities = 119/127 (94%), Gaps = 6/127 (5%)
Strand=Plus/Plus
Query 1267 TTTTGAACTAATTAGCACTTGAGATTACAAAACTACAATTAGACCT-CAAATTCACTTTT 1325
|||||||||||||||||||| |||||||||||||||||||||| || ||||||||| |||
Sbjct 1356 TTTTGAACTAATTAGCACTTCAGATTACAAAACTACAATTAGA-CTCCAAATTCAC-TTT 1413
Query 1326 AAAATGTAGAGAC--ATCACATCATATTGATTCTGCTCTTT-GCGAGCTAAGTCCATTTT 1382
|||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1414 AAAATGTAGAAACATATCACATCATATTGATTCTGCTCTTTTGCGAGCTAAGTCCATTTT 1473
Query 1383 ATCTCAC 1389
|||||||
Sbjct 1474 ATCTCAC 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5