BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495150
Length=2125
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50860.1 | Symbols: | Protein kinase superfamily protein | ... 3203 0.0
> AT5G50860.1 | Symbols: | Protein kinase superfamily protein
| chr5:20693463-20697039 REVERSE LENGTH=2114
Length=2114
Score = 3203 bits (1734), Expect = 0.0
Identities = 2013/2141 (94%), Gaps = 46/2141 (2%)
Strand=Plus/Plus
Query 1 CGATAATGTTAAGCTAAAGACAGAGAGCTTTCACCGA-T-----TC----AGTCGATGGG 50
|||||||||||||||||||| ||| ||| |||||||| | || || |||||||
Sbjct 3 CGATAATGTTAAGCTAAAGAGAGAAAGC-TTCACCGATTCAAAATCATTTAGCCGATGGG 61
Query 51 ATGCGTTTTATGCAAAGAATCCACCGGAGACAGACGGAAACATAATAATCCCGATGAACC 110
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 62 ATGCGTTTTATGCAAAGAATCCACCGGAGACAAACGGAAACACAATAATCCCGATGAACC 121
Query 111 TCCTCCGTTAGACCACCGTAAGGCAGATGATTTACCTTCTTCTTCTTCAACCACCACCAC 170
||||||| ||||| |||||| | || |||||||||||||||||||||||||||||| |
Sbjct 122 TCCTCCGGCAGACCTCCGTAATACGGAGGATTTACCTTCTTCTTCTTCAACCACCACCGC 181
Query 171 CGCCGTTGTTTCTGTACCGGAGGTAGTC-GAAATCGGAGAGAAGAAGAAGGGTTTAGACT 229
|||| ||||||| | || | || || | || |||||||||| | |||||| |
Sbjct 182 CGCC---ATTTCTGT--C-GA---AATCGGAGA---GA-AGAAGAAGAAAGATTTAGATT 228
Query 230 CGATTCAGATTCAGCC--ACCG-CGAACATGGCACACTGGCGACTTCTCCGCCGGCTCTT 286
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 229 CGATTCAGATTCAGCCGGAGAGAAGAACATGGCACACTGGCGACTTCTCCGCCGGCTCTT 288
Query 287 CTCGCCGGCCGGGGATGAGCCTCCGTACGCCGGAAGGATGGCCACCGTGGCTAATTTCTG 346
||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||| |||
Sbjct 289 CTCGCCGTCCGGGGATGAGTCTCCGTACGCCGGAAGGATGGCCACCTTGGCTTATTGCTG 348
Query 347 CTTGCGGCGATTCGATCAAAGACTTAACACCTCGCAGAGCCACCACATACGAAAAGCTCG 406
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 349 CTTGTGGCGATTCGATCAAAGACTTAACACCTCGCAGAGCTACCACATACGAAAAGCTCG 408
Query 407 AGAAGATTGGACAAGGAACTTATAGCAATGTGTACAAGGCGAAAGATCTATTGACTGGGA 466
|||||||||| |||||||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct 409 AGAAGATTGGGCAAGGAACGTATAGCAATGTGTACAAGGCGAAAGATTTATTGAGTGGGA 468
Query 467 AGATTGTAGCTTTGAAGAAAGTTAGGTTTGATAATTTGGAAGCAGAGAGTGTTAAATTTA 526
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 469 AGATTGTAGCTTTGAAGAAAGTTAGGTTTGATAATTTGGAAGCTGAGAGTGTTAAATTTA 528
Query 527 TGGCTAGAGAGATTCTTGTGTTGCGACGGCTTAATCATCCTAATGTTATTAAGCTTGAAG 586
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 529 TGGCTAGAGAGATTCTTGTGTTACGACGGCTTAATCATCCTAATGTTATTAAGCTTCAAG 588
Query 587 GTTTGGTTACTTCGCGGGTTTCGTGTAGTCTCTACCTTGTTTTTGAGTATATGGAGCATG 646
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 589 GTTTGGTTACTTCACGGGTTTCCTGTAGTCTCTACCTTGTTTTTGAGTATATGGAGCATG 648
Query 647 ATCTTTCTGGTCTTTCTGCTACTC-AGGCTCTCAAGTTTGATCTTCCTCAGGTTAAATGC 705
|||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 649 ATCTTTCTGGTCTTGCTGCTACCCAAGG-TCTCAAGTTTGATCTTCCTCAGGTTAAATGC 707
Query 706 TTTATGAAGCAGCTACTATCTGGATTGGAGCATTGCCATAGTCGAGGAGTCTTACATCGG 765
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 708 TTTATGAAGCAGCTACTATCTGGATTGGAGCATTGCCATAGTCGAGGAGTATTACATCGG 767
Query 766 GATATCAAAGGTTCTAATCTTCTTATAGATAATGATGGAATACTGAAGATTGCTGATTTT 825
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GATATCAAAGGTTCTAATCTTCTTATAGATAATGATGGAATACTGAAGATTGCTGATTTC 827
Query 826 GGGTTGGCCACGTTTTATGACCCGAAGCAAAAGCAAACAATGACTAGTCGTGTTGTCACG 885
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 828 GGGTTGGCTACGTTTTATGACCCAAAGCAAAAGCAAACAATGACTAGTCGTGTTGTCACA 887
Query 886 CTTTGGTACCGTCCTCCCGAGCTTCTTCTTGGAGCTACCAATTATGGAACTGGTGTTGAT 945
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 888 CTTTGGTACCGTCCTCCCGAGCTTCTTCTTGGAGCTACCAGTTATGGAACTGGTGTTGAT 947
Query 946 CTTTGGAGTGCCGGTTGTATTATGGCAGAATTACTTGCTGGCAAGCCCGTTATGCCAGGA 1005
||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 948 CTTTGGAGTGCTGGTTGTATTATGGCTGAGTTACTTGCTGGCAAGCCCGTTATGCCGGGA 1007
Query 1006 AGAACCGAGGTCGAACAACTTCATAAGATATTCAAATTATGTGGCTCCCCTTCAGATTCG 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AGAACCGAGGTCGAACAACTTCATAAGATATTCAAATTATGTGGCTCCCCTTCAGATTCG 1067
Query 1066 TACTGGAAGAAGTACAAACTGCCAAACGCAACTCTTTTTAAGCCGCAACATCCGTACAAG 1125
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TACTGGAAGAAGTACAGACTGCCAAACGCAACTCTTTTTAAGCCGCAACATCCGTACAAA 1127
Query 1126 CGTTGTGTGGCTGAAGCCTTCAATGGTTTCACTCCATCCTCTGTGCATCTAGTTGAGACA 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CGTTGTGTGGCTGAAGCCTTCAATGGTTTCACTCCATCCTCTGTGCATCTAGTTGAGACA 1187
Query 1186 CTTCTTGCTATAGACCCTGCTGATCGAGGAACTTCTACCTCGGCATTGAGTAGTGAATTC 1245
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1188 CTTCTCACTATAGACCCTGCTGATCGAGGAACTTCTACCTCGGCATTGAATAGTGAATTC 1247
Query 1246 TTTACTACTGAACCGTTACCTTGTGATCCTTCAAGTTTACCAAAGTATCCACCTTCCAAA 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TTTACTACTGAACCGTTACCTTGTGATCCTTCAAGTTTACCAAAGTATCCACCTTCCAAA 1307
Query 1306 GAACTGAATGTAAAGCTGAGGGACGAAGAGGCAAGAAGGCAAAAGGGTCTTGCTGGAAAA 1365
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1308 GAACTGAATGTAAAGCTGAGGGACGAAGAGTTAAGAAGGCAAAAGGGTCTTGCTGGAAAA 1367
Query 1366 GGTAGTGGTATTGATGGAGCTAGAAGAATAAGGTATCGTGGGGATCGCACTGGGCGAGCT 1425
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1368 GGTAGTGGTATTGATGGAGCTAGAAGAATAAGGTATCGAGGGGATCGCACTGGGCGAGCT 1427
Query 1426 ATTCCAGCCCCAGAAGCTAATGCCGAGAGCCAAGCAAACTTAGATAGATGGAGAGCGATA 1485
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1428 ATTCCAGCCCCAGAAGCTAATGCCGAGAGTCAAGCAAACTTAGATAGATGGAGATCGATA 1487
Query 1486 TCACAAACAAATGGAAAGAGCAAGAGTGAGAAGTTTCCGCCTCCTCACCAGGACGGTGCA 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TCACAAACAAATGGAAAGAGCAAGAGTGAGAAGTTTCCGCCTCCTCACCAGGACGGTGCA 1547
Query 1546 GTTGGGTACCCATTGGAAGATC-AGTCAAAGAAAAGCTCAGTATTTGGTGCAAAGGCTGA 1604
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||
Sbjct 1548 GTTGGGTACCCATTGGAAGATCTA-TCAAAGAAAACCTCAGTATTTGGTGCAAAGACTGA 1606
Query 1605 GACTTCTTTGGGGTTATCAAGATCATTAAAGTCTGGGGAAGGGACATCAATGAGAAAGAT 1664
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 GACTTCTTTTGGGTTATCGAGATCATTAAAGTCTGGGGAAGGGACATCAATGAGAAAGAT 1666
Query 1665 TTCAAACAAAGACGGGGCTCGTGGGGCTTCTTCTAGAAAGTACATATGGGGACTTAAACC 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 TTCAAACAAAGACGGGGCTCGTGGGGCTTCTTCTAGAAAGTACATATGGGGACTTAAACC 1726
Query 1725 TCCTCCAGCGCTCGGGCTATCGATGGACTTACTTTTCAGGAGCAGATCAGAAGTTTTTGG 1784
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 TCCTCCAGCACTCGGGCTATCGATGGACTTACTTTTCAGGAGCAGATCAGAAGTTTTTGG 1786
Query 1785 GATCCGGAGATAGGATAGATGATTGAGAAATGAGTTGGAGTTGTATTAGTGCATGAAAAT 1844
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1787 GATCCGGAGATAGGAAAGATGATTGAGAAATGAGTTGGAGTTATATTAGTGCATCAAAAT 1846
Query 1845 AAGAGATTGCTTCCGTTTCGAGAGAGATTGGTTGAAGGATTTCAAATTCTTTGTAGCAGA 1904
||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1847 AAGAGATTGCTTCCGTTTCAAGAGAGAATGGTTGAAGGAGTTCAAATTCTTTGTAGCAGA 1906
Query 1905 ATAGAGAGAGAGTGCACAAATGGAAAATGTGGTTTTGACTCTGATGTAAAAACATAATTC 1964
|||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1907 ATAGAG------TGCACAAATAGAAAATGTGATTTTGACTCTGATGTAAAAACATAATTC 1960
Query 1965 AGGTAGCTTTAGAATCCTACTTTTAAATTGTATAGTTGTTGTCTTGTTGAAATGGATTTT 2024
||||||||||||||||||||||||||||||||||||| || | | |||||||||||
Sbjct 1961 AGGTAGCTTTAGAATCCTACTTTTAAATTGTATAGTT-TT-T---G---AAATGGATTTT 2012
Query 2025 GAGGCTTCAAAGATTAGTCTTGTGATAAGTGTGTTGCAAAAAATTGTCGTGAATAGATGT 2084
|||||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 2013 GAGGCTTCCAAGATTGGTCTTGTGATAAGAGTGTTGCTAAAAATTGTCGTGAATAGATGT 2072
Query 2085 GCAAACATTTTCATTGCTGCTTTAAATATTGGGTCTTGTTT 2125
|||||||||| |||||||||| ||||||||| |||||||
Sbjct 2073 TCAAACATTTTGATTGCTGCTTCAAATATTGGAACTTGTTT 2113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105370943955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5