BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495170 Length=732 Score E Sequences producing significant alignments: (Bits) Value AT5G51040.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 878 0.0 > AT5G51040.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631). | chr5:20750660-20752023 FORWARD LENGTH=867 Length=867 Score = 878 bits (475), Expect = 0.0 Identities = 680/770 (88%), Gaps = 50/770 (6%) Strand=Plus/Plus Query 1 AAAAATGGCTACCCGAAGAGCTCTGATTAACGTCCACCGGATCATTCGCTCCACCGCCGT 60 ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| Sbjct 37 AAAAATGGCTACCCGAAAAGCTCTGATCAACGTTCACCGGATCATTCGCTCCACCGCCGT 96 Query 61 GGTAAGCC-GACGCTCCGTCGTTCCTGCCGCCGCTAACCGG---------ATTATATTCC 110 ||| ||| || |||| || |||||||||||||||||||| |||||||||| Sbjct 97 GGTTGGCCGGA-GCTCTATCATTCCTGCCGCCGCTAACCGGTCATATCCTATTATATTCC 155 Query 111 GGAATGGAGTTGATTCGGGGACGAGATTCTTCTGTGGGAACACTGCTTCTGCCCAGAATT 170 ||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||||||| Sbjct 156 GGAATGGAGTTGATTTGGGGGCGAGATTCTTCTGTGAGAACACTGCGTCTGCCCAGAATT 215 Query 171 TTGATATTGATCTCTCTAACGAAGAGAATAAGAGAAGAACGATCAACAGATTGTTGTATA 230 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 216 TCGATATTGATCTCTCTAACGAAGAGAATAAGAGAAGAACGATCAACAGATTGTTGTATA 275 Query 231 GGAGCAAGCAACGAGGGTTTTTGGAACTTGATCTTGTTTTGGGGAATTGGGTTGAGGAGA 290 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 276 GGAGCAAGCAAAGAGGGTTTTTGGAACTTGATCTTGTTTTGGGGAATTGGGTTGAGGAGA 335 Query 291 ATGTTAATTCCATGGACGAAAATGGTGTTAAATCCCT-A---A--T--TC-A-----T-G 335 ||||||||||||||||||||||||||||||||||||| | | | || | | | Sbjct 336 ATGTTAATTCCATGGACGAAAATGGTGTTAAATCCCTAATTCATGTCCTCAATTTGGTAG 395 Query 336 --TC-----CT--C-AATT--TGGAAAACCCTGATCTCTGGAAATGGCTAACTGAACAGG 383 || || | |||| | ||||||||||||||||||||||||||||||||||||| Sbjct 396 AATCTGAAGCTACCAAATTACTTGAAAACCCTGATCTCTGGAAATGGCTAACTGAACAGG 455 Query 384 AACAGCCTCCGGAGGCAGTGAGCTCTAATCCGGTGTTCTCCGCGTTACACGAGAAAGTCA 443 ||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||| Sbjct 456 AACAGCCTCCGGAAGCAGTGAGTTCAAATCCGGTGTTCTCGGCGTTACACGAGAAAGTCA 515 Query 444 TGAAGAATCTGAACAAGCATGCAGCACCAGAGACACGCGCAGCGGCTGGACAGCCCTGGG 503 ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| Sbjct 516 TGAAGAATCTGAACAAGCATGCAGCGCCAGAGACTCGTGCAGCGGCTGGACAGCCCTGGG 575 Query 504 TCAAAGGCTGGGACGATTTCAAGAGAGGCCGTGATGCTCCTATTTCAGGGAACCAGTAAA 563 ||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 576 TCAGAGGATGGGACGATTTCAAGAGAGGCCGTGATGCTCCCATTTCAGGGAATCAGTAAA 635 Query 564 CATAAACTCCGCTTTACAAAA-GTAACAAACTGAAAATACGTTATGATATGAAGTATCTG 622 |||||||||| |||| ||||| ||| |||| |||||||| ||||||||||||| | Sbjct 636 CATAAACTCCTCTTTTCAAAAAGTATCAAAGTGAAAATAAGTTATGATATGAA--A---- 689 Query 623 AAAATAGATATTAAATCGTAGCAACCATTACTTTTACTGTTGCATTAATAAAGAACCAGG 682 | |||||| || | ||||||||||||||||| ||| ||| ||||||||||||||||| Sbjct 690 A---TAGATACCAAGTAGTAGCAACCATTACTTT-ACTATTGTATTAATAAAGAACCAGG 745 Query 683 CCGTGAAGAAGGTCCATTGACGTTGAGATAATTACAAAGTTGTGTCTTGT 732 ||||||||||||||||| | |||||||||||||||| |||||||||||| Sbjct 746 CCGTGAAGAAGGTCCATGG-CGTTGAGATAATTACAGTGTTGTGTCTTGT 794 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35515541929 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5