BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495173
Length=3097
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51070.1 | Symbols: ERD1, CLPD, SAG15 | Clp ATPase | chr5:20... 4815 0.0
> AT5G51070.1 | Symbols: ERD1, CLPD, SAG15 | Clp ATPase | chr5:20764315-20768681
FORWARD LENGTH=3202
Length=3202
Score = 4815 bits (2607), Expect = 0.0
Identities = 2853/2974 (96%), Gaps = 8/2974 (0%)
Strand=Plus/Plus
Query 126 CGATCATGGAGGTGTTATCTACTTCCTCACCACTAACGCTTCGCTCACGCCGtctcctct 185
||||||||||||||||||||||||||||||| |||||||||| ||| | ||| |||||||
Sbjct 160 CGATCATGGAGGTGTTATCTACTTCCTCACCTCTAACGCTTCACTCCCACCGACTCCTCT 219
Query 186 cttcttcatcttcttcttcacatgtcacctccatcgccgcttcttcactttcttcattcg 245
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 CTGCTTCTTCTTCTTCTTCACATGTCACCTCCATCGCCGCTTCTTCACTTTCTTCATTCG 279
Query 246 cttcttcatATCTCGGAATCTCCCTCTCTAATCGCACGATCCACCGCTTCTCCACAACTC 305
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 280 CTTCTTCATATCTCGGAATCTCCCTTTCTAACCGCACGATCCACCGCTTCTCCACAACTC 339
Query 306 CGACGAACTTCAGACGATTTCCTCAAAGAAAACGGAAGAAATTCACACCAATTTCGGCGG 365
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 340 CGACGAACTTAAGACGATTTCCTCAAAGAAAACGGAAGAAATTCACTCCGATTTCAGCGG 399
Query 366 TTTTCGAACGGTTCACCGAACGAGCGATCAGAGCTATCATCTTCTCTCAGAAGGAAGCTA 425
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 400 TTTTCGAACGGTTCACCGAACGAGCGATCAGAGCTATAATCTTCTCTCAGAAGGAAGCTA 459
Query 426 AATCGTTGGGGAAAGACATGGTTTACACTCAGCATCTTCTCTTAGGTTTGATCGCTGAGG 485
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 460 AATCGTTGGGAAAAGATATGGTTTACACGCAGCATCTTCTCTTAGGTTTGATCGCTGAGG 519
Query 486 ATCGTGATCCTCAAGGTTTCCTTGGATCCGGTATCACCATCGACAAGGCTCGTGAAGCTG 545
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 ATCGTGATCCTCAAGGCTTCCTTGGATCCGGTATCACCATCGACAAGGCTCGTGAAGCTG 579
Query 546 TTTGGAGTATTTGGGACGAAGCTAATTCCGATTCGAAACAGGAGGAAGTTTCTTCCACTT 605
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 580 TTTGGAGTATTTGGGACGAAGCTAATTCCGATTCGAAACAGGAGGAAGCTTCTTCTACTT 639
Query 606 CGTATTCAAAATCGACGGACATGCCTTTCTCTATTAGTACGAAACGAGTCTTCGAAGCTG 665
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 640 CGTATTCAAAATCGACGGACATGCCTTTCTCTATCAGCACGAAACGAGTCTTTGAAGCTG 699
Query 666 CGGTTGAGTACTCTAGGACTATGGATTGTCAATATATCGCACCGGAACATATAGCCGTCG 725
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 700 CGGTTGAGTACTCTAGGACTATGGATTGTCAATATATCGCACCGGAGCATATAGCCGTTG 759
Query 726 GACTCTTCACCGTTGATGACGGTAGCGCCGGCCGAGTCCTCAAGAGATTGGGAGCAAATA 785
||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||
Sbjct 760 GACTCTTCACCGTTGATGATGGTAGCGCCGGCAGAGTTCTCAAGAGATTGGGAGCAAATA 819
Query 786 TGAATTTGCTCACAGCAGCAGCACTCACAAGACTTAAAGGAGAGATTGCTAAAGATGGAA 845
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 820 TGAATTTGCTCACAGCTGCAGCACTTACAAGACTTAAAGGAGAGATTGCTAAAGATGGAA 879
Query 846 GAGAACCATCTTCTTCATCTAAAGGGAGCTACGAGGCGCCTCCT-GCTGGTCGAATTGTT 904
|||| ||||||||||||||||||||||||| |||| | |||||| | ||||||||||| |
Sbjct 880 GAGAGCCATCTTCTTCATCTAAAGGGAGCTTCGAGTCTCCTCCTAG-TGGTCGAATTGCT 938
Query 905 GGTTCTGGAACTGGTGGAAAAGCGAAAGCGAAAACTGTACTGGAACAGTTCTGTGTGGAT 964
||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 939 GGTTCTGGACCTGGTGGAAAA---AAAGCGAAAAATGTACTGGAACAGTTCTGTGTGGAT 995
Query 965 CTAACAACACGTGCTAGTGAGGGTCTTATTGATCCTGTTATTGGTCGGGAAAAAGAAGTT 1024
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 996 CTGACAGCACGTGCTAGTGAGGGTCTTATTGATCCTGTTATTGGTCGGGAAAAAGAGGTT 1055
Query 1025 CAAAGAGTCATCCAGATACTTTGCCGCAGAACTAAAAACAACCCTATTCTTCTTGGTGAA 1084
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1056 CAAAGAGTTATCCAGATACTTTGCCGCAGAACTAAAAACAACCCAATTCTTCTTGGTGAA 1115
Query 1085 GCTGGTGTTGGGAAGACTGCTATTGCCGAAGGACTAGCGATTAGTATTGCAGAAGCAAAG 1144
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1116 GCTGGTGTTGGGAAGACTGCCATTGCTGAAGGACTAGCGATTAGTATTGCAGAAGC-CAG 1174
Query 1145 -GCTCCTGGATTTCTCTTGACGAAACGCATCATGTCCCTCGATATAGGATTGCTAATGGC 1203
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1175 TGCTCCTGGATTTCTCTTGACGAAACGCATCATGTCCCTGGATATAGGATTGCTAATGGC 1234
Query 1204 CGGTGCAAAAGAAAGGGGAGAACTGGAGGCTCGGGTCACTGCTTTGATAAGCGAGGTCAA 1263
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1235 CGGTGCAAAAGAAAGGGGAGAGCTGGAGGCTCGAGTCACTGCTTTGATAAGCGAGGTTAA 1294
Query 1264 AAAATCAGGTAAGGTCATTCTCTTCATAGATGAAGTGCACACACTTATTGGGTCTGGTAC 1323
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1295 AAAATCAGGTAAGGTCATTCTCTTCATAGATGAAGTGCATACACTTATTGGGTCTGGCAC 1354
Query 1324 AGTTGGAAGAGGGAACAAAGGTTCTGGGCTTGACATTGCCAACCTCTTGAAACCATCACT 1383
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1355 AGTTGGAAGAGGGAACAAAGGGTCTGGGCTTGACATTGCTAACCTCTTGAAACCATCACT 1414
Query 1384 TGGAAGAGGTGAACTTCAGTGCATTGCATCTACAACCCTTGACGAATTTAGGAGTCAATT 1443
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1415 TGGAAGGGGTGAACTTCAGTGCATTGCATCCACAACCCTTGACGAATTTAGGAGTCAGTT 1474
Query 1444 TGAGAAGGACAAAGCCCTTGCAAGGAGATTCCAGCCAGTGTTGATTAATGAGCCAAGCGA 1503
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1475 TGAGAAGGACAAAGCCCTTGCAAGGAGATTTCAGCCAGTGTTGATTAACGAGCCAAGCGA 1534
Query 1504 GGAAGATGCGGTGAAGATTTTGTTGGGCCTTCGTGAAAAATATGAAGCCCATCACAATTG 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 GGAAGATGCGGTGAAGATTTTGTTGGGCCTTCGTGAAAAATATGAAGCCCATCACAATTG 1594
Query 1564 CAAATATACTATGGAAGCCATAGATGCTGCAGTGTACCTTTCATCACGATATATCGCTGA 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 CAAATATACTATGGAAGCCATAGATGCTGCAGTGTACCTTTCATCACGATATATCGCTGA 1654
Query 1624 TAGATTTCTTCCAGATAAAGCTATTGATCTCATTGACGAGGCAGGAAGCAGAGCTCGTAT 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 TAGATTTCTTCCAGATAAAGCTATTGATCTCATTGACGAGGCAGGAAGCAGAGCTCGTAT 1714
Query 1684 TGAAGATTTTAGGAAGAAAAAGGAGGATGCAATCTGTATCCTATCGAAGCCACCTAATGA 1743
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 TGAAGCTTTTAGGAAGAAAAAGGAGGATGCAATCTGTATCCTATCGAAGCCACCTAATGA 1774
Query 1744 TTACTGGCAAGAGATCAAAACAGTTCAGGCCATGCACGAAGTGGTTCTCTCAAGCAGGCA 1803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 TTACTGGCAAGAGATCAAAACAGTTCAGGCCATGCACGAAGTGGTTCTCTCAAGCAGGCA 1834
Query 1804 AAAGCAGGATGATGGTGATGCCATTGCAGATGAATCTGGTGAACTAGTTGAAGAGTCTTC 1863
|||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1835 AAAGCAGGATGACGGTGATGCCATTTCAGATGAGTCTGGTGAACTAGTTGAAGAGTCTTC 1894
Query 1864 TCTGCCGCCTGCATCAGGGGACGATGAGCCTATACTGGTGGGACCTGATGATATTGCAGC 1923
| |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1895 TTTGCCACCTGCAGCAGGCGACGATGAGCCTATACTGGTGGGACCTGATGATATTGCAGC 1954
Query 1924 TGTTGCATCGGCTTGGTCGGGAATACCAGTTCAGCAGATCACTGCAGATGAAAGAATGCT 1983
|||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1955 CGTTGCATCGGTTTGGTCTGGAATTCCAGTTCAGCAGATCACTGCAGATGAAAGAATGCT 2014
Query 1984 TCTTATGGGTCTAGAAGACCAGCTTAGAAGCAGAGTTGTTGGTCAAGATGAGGCTGTAGC 2043
||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 2015 TCTTATGAGTCTAGAAGATCAGCTTAGAGGCAGAGTTGTTGGTCAAGATGAGGCGGTAGC 2074
Query 2044 TGCCATATCTAGAGCTGTTAAGAGGTCCCGGGTTGGCTTAAAAGATCCCGACCGTCCAAT 2103
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2075 TGCCATATCTAGAGCTGTGAAGAGGTCCCGGGTTGGCTTAAAAGATCCCGACCGTCCAAT 2134
Query 2104 TGCCGCTATGCTTTTCTGTGGACCAACAGGGGTTGGAAAAACAGAGCTTACAAAAGCTCT 2163
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2135 TGCTGCTATGCTTTTCTGTGGACCAACAGGGGTTGGAAAAACGGAGCTTACAAAAGCTCT 2194
Query 2164 GGCAGCAAATTATTTTGGATCGGAGGAATCCATGCTGAGATTGGACATGAGTGAATACAT 2223
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2195 GGCAGCAAATTATTTTGGCTCGGAAGAATCCATGCTGAGATTGGACATGAGTGAATACAT 2254
Query 2224 GGAGCGTCATACTGTGAGCAAGTTGATAGGCTCTCCTCCCGGATATGTTGGCTTTGAAGA 2283
|||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 2255 GGAGCGTCATACTGTGAGCAAGCTGATAGGCTCTCCTCCTGGTTATGTTGGCTTTGAAGA 2314
Query 2284 AGGTGGAATGCTTACAGAAGCTATCAGGAGGCGTCCTTTTACAGTGGTATTGTTTGATGA 2343
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 2315 AGGTGGAATGCTTACAGAAGCTATCAGGAGACGTCCTTTTACAGTGGTTTTGTTCGATGA 2374
Query 2344 GATAGAGAAAGCCCATCCGGATATCTTCAATATTCTTCTCCAGCTGTTCGAAGATGGCCA 2403
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2375 AATAGAGAAAGCACATCCGGATATCTTCAATATTCTTCTCCAGCTGTTCGAAGATGGCCA 2434
Query 2404 TCTAACCGATTCACAGGGAAGGAGAGTATCTTTTAAGAACGCACTAATCATAATGACGTC 2463
|||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 2435 TCTAACTGATTCACAGGGAAGGAGAGTATCTTTTAAGAACGCATTGATCATAATGACCTC 2494
Query 2464 TAATGTCGGATCATCGGCCATTGCAAAGGGAAGACATGGTTCAATAGGTTTTATCCTCGA 2523
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2495 TAATGTCGGATCATTGGCCATTGCAAAGGGAAGACATGGTTCAATAGGGTTTATCCTCGA 2554
Query 2524 CGATGATGAAGAGGCAGCATCTTATACCGGAATGAAAGCTTTGGTAGTCGAAGAACTCAA 2583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2555 TGATGATGAAGAGGCAGCATCTTATACCGGAATGAAAGCTTTGGTAGTCGAAGAACTCAA 2614
Query 2584 AAACTATTTCCGTCCAGAGTTGTTGAACCGGATAGATGAAATCGTCATTTTCCGACAGCT 2643
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2615 GAACTATTTCCGTCCAGAGTTGTTGAACCGAATAGACGAAATCGTCATTTTCCGACAGCT 2674
Query 2644 CGAGAAGGCTCAGATGATGGAGATCTTGAACCTGATGCTACAAGACTTGAAGTCAAGGCT 2703
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2675 AGAGAAGGCTCAGATGATGGAGATCTTGAACCTGATGCTACAAGACTTGAAGTCGAGGCT 2734
Query 2704 CGTGGCACTTGGAGTCGGTTTAGAGGTGTCTGAACCCGTCAAGGAGCTCATATGCAAACA 2763
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2735 CGTGGCACTCGGAGTTGGTTTAGAGGTGTCTGAACCCGTCAAGGAGCTCATATGCAAACA 2794
Query 2764 AGGCTATGATCCAGCTTACGGTGCACGGCCACTCCGTAGAACTGTCACAGAGATTGTTGA 2823
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2795 AGGCTATGATCCAGCTTACGGTGCACGACCACTCCGGAGAACTGTCACAGAGATTGTTGA 2854
Query 2824 AGATCCACTCAGCGAAGCCTTTCTTGCTGGGAGCTTCAAGCCTGGTGACACTGCTTTTGT 2883
|||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 2855 AGATCCACTCAGTGAAGCCTTTCTTGCCGGGAGCTTCAAGCCTGGTGATACGGCTTTTGT 2914
Query 2884 AGTTCTCGATGATACCGGAAACCCATCGGTTCGGACCAAACCAGATTCTTCCACTGTACG 2943
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2915 AGTTCTTGATGATACCGGAAACCCATCGGTTCGGACCAAACCAGATTCTTCCACTATACG 2974
Query 2944 AGTTACAGACAAGACATCGATCGCATAGTTTCACCATTGGAGGATTGTATATAAAGATTC 3003
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2975 AGTTACAGACAAAACATCGATCGCATAGTTTCACCATTGGAGGATTGTATATAAAGATTC 3034
Query 3004 TTTGATTATACTCACTCGTCTTATACTTGAATCTCAATTGCTTGTTGCAAACCTGTATAT 3063
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 3035 TTTGATTATACTCACTCGTCTTATACTTAAATCTCAATTGCTTGTTGCAAACTTGTATAT 3094
Query 3064 ATAAACGATACATAGTGATTAGTGCGTGAGGTAA 3097
||||| ||||||||||||||||| ||||||||||
Sbjct 3095 ATAAA-GATACATAGTGATTAGTCCGTGAGGTAA 3127
Score = 145 bits (78), Expect = 3e-33
Identities = 108/121 (89%), Gaps = 8/121 (7%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaaaaaCGTTGCCGTGACGTGTCATCTTACTCCATCCCTTCCTTTTGCTT 60
||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACAAAAAAATAACGTTGCCTTGACGTGTCATCTTACTCCATCCCTTCCTTTTGCTT 60
Query 61 CTTCTCCTTTACTTCCttttttttt-CGATTTTCTTCTAAACATTTTGTCACAAATCGGA 119
||||||||||||||||||||||||| | ||| | | | |||||||||||||| ||||
Sbjct 61 CTTCTCCTTTACTTCCTTTTTTTTTTC--TTT-C--C-AT-CATTTTGTCACAAACCGGA 113
Query 120 A 120
|
Sbjct 114 A 114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 154012515010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5