BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495275
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RR... 2106 0.0
AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,... 782 0.0
> AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr5:21130320-21133551
FORWARD LENGTH=1426
Length=1426
Score = 2106 bits (1140), Expect = 0.0
Identities = 1263/1322 (96%), Gaps = 10/1322 (1%)
Strand=Plus/Plus
Query 11 AGGAAACATGAAGCCTGTCTTTTGCGGGAACTTTGAGTATGATGCTCGTGAGAGTGATCT 70
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 113 AGGAATCATGAAGCCTGTCTTTTGCGGAAACTTTGAGTATGATGCTCGTGAGAGTGATCT 172
Query 71 TGAGCGGCTTTTCA-AAAGATACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTG 129
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TGAGCGGCTTTTCAGAAAG-TACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTG 231
Query 130 CTTTTGTCTATATGGAAGATGAAAGGGATGCTGAAGATGCCATCCGAGCGCTTGATCGCT 189
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 232 CTTTTGTCTATATGGAAGATGAAAGGGATGCTGAAGATGCAATTCGAGCGCTTGATCGCT 291
Query 190 TTGAATATGGCCGCACGGGACGCAGACTCCGTGTTGAGTGGACAAAGAATGACCGTGGAG 249
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTGAATATGGTCGCACAGGACGCAGACTCCGTGTTGAGTGGACAAAGAATGACCGTGGAG 351
Query 250 GTGCTGGAAGATCAGGTGGTTCGAGGAGATCATCGTCTGGCATGAGACCTTCCAAGACTC 309
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 352 GTGCTGGAAGATCAGGTGGTTCGAGGAGATCATCTTCTGGCTTGAGACCTTCCAAGACTC 411
Query 310 TGTTTGTGATCAACTTTGATGCACAGAACACTAGGACTCGGGACTTGGAGAGACACTTTG 369
|||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 412 TGTTTGTGATCAACTTCGATGCACAAAACACTAGGACTCGGGACTTGGAGAGGCACTTTG 471
Query 370 AGCCGTATGGAAAAATTGTTAATGTTAGAATCAGAAGGAATTTTGCATTTATCCAATATG 429
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 472 AGCCGTATGGTAAAATTGTTAATGTTAGAATCAGAAGGAATTTTGCATTCATCCAATATG 531
Query 430 AGTCACAAGAAGATGCCACCAGAGCACTGGATGCTACAAATTCAAGTAAGCTGATGGATA 489
|| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 532 AGGCACAAGAAGATGCTACCAGAGCACTGGATGCTACAAATTCCAGTAAGCTGATGGATA 591
Query 490 AGGTGATCTCAGTGGAGTATGCAGTGAAAGATGATGATTCGAGAGGAAATGGGTACAGTC 549
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 592 AGGTGATCTCAGTGGAGTATGCAGTGAAAGATGATGATTCAAGAGGAAATGGATACAGTC 651
Query 550 CTGAAAGACGGCGTGATAGGTCACCTGATAGGAGAAGGCGGTCACCTAGTCCTTACAGAA 609
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 652 CTGAAAGACGGCGTGATAGGTCACCTGATAGGAGAAGGCGATCACCAAGTCCTTACAGAA 711
Query 610 GAGAAAGAGGCAGTCCTGACTATGGCCGAGGAGCTAGTCCAGTAGCTCACAAAAGGGAAA 669
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 712 GAGAAAGGGGAAGTCCTGACTATGGCCGAGGTGCTAGTCCAGTAGCTCACAAAAGGGAAA 771
Query 670 GGACTAGTCCTGATTATGGTCGAGGACGACGCAGCCCCAGCCCTTACAAGAGAGCCAGGC 729
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 772 GGACTAGTCCTGATTATGGTCGTGGAAGACGCAGCCCCAGCCCTTACAAGAGAGCCAGGC 831
Query 730 TTAGCCCAGATTACAAGAGGGATGACCGTAGGAGGGAGAGAGTGGCTAGCCCAGAGAATG 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TTAGCCCAGATTACAAGAGGGATGACCGTAGGAGGGAGAGAGTGGCTAGCCCAGAGAATG 891
Query 790 GAGCTGTAAGGAACCGAAGTCCAAGAAAAGGACGTGGTGAAAGCAGGAGTCCTCCCCCAT 849
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 892 GAGCTGTAAGGAACCGAAGCCCAAGAAAAGGACGTGGTGAAAGCAGGAGTCCTCCTCCAT 951
Query 850 ATGAGAAGAGGAGGGAGAGCAGGAGTCCTCCTCCATATGAGAAGAGGAGAGAAAGCAGGA 909
|||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||
Sbjct 952 ATGAGAAGAGGAGGGAAAGCAGGAGTCCTCCGCCATATGAGAAGAGAAGGGAAAGCAGGA 1011
Query 910 GTCCTCCTCCATATGAGAAGAGGAGGGAGAGATCAAGGTCAAGGTCAAAGTCAAGCCCTG 969
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1012 GTCCTCCTCCATATGAGAAGAGGAGGGAGAGGTCAAGGTCAAGGTCGAAGTCAAGCCCTG 1071
Query 970 AGAATGGTCAAGTTGAAAGCCCTGGACAAATAATGGAAGAAGAAGCTGGAAGAGGATACG 1029
|||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1072 AGAATGGTCAAGTTGAGAGCCCTGGGCAAATAATGGAAGTAGAAGCTGGAAGAGGATACG 1131
Query 1030 ATGGTGCAGACAGCCCGATACGCGAGAGCAGCCCCTCTCGTTCGCCTCCAGCAGAGGAAT 1089
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1132 ATGGAGCAGACAGCCCGATACGCGAGAGCAGCCCCTCTCGTTCGCCGCCAGCAGAGGAAT 1191
Query 1090 GATTGGAGATGCAGACAGATGATTGTGTTGGATTCACAAACAAAAGATGTCTCTCAAAGT 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GATTGGAGATGCAGACAGATGATTGTGTTGGATTCACAAACAAAAGATGTCTCTCAAAGT 1251
Query 1150 AGCTGTATCTGAA-CTCAAGTCTTTTGTTATGTCATGTTTAGTATTTTAGTGTGTTCCTT 1208
|| |||||| ||| || |||||||||| |||||||||| ||||||| |||||||| ||
Sbjct 1252 AGTTGTATCCGAAACTGAAGTCTTTTGCTATGTCATGT--AGTATTT-AGTGTGTTATTT 1308
Query 1209 TGGGTCTTTCGTTAAGTGCTTTTGTAAACTTTATTATGACTCCATTCGAAATCGCTTGTC 1268
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 TGGGTCTTT-GTTAAGTG-TTTTGTAAACTTTATTATGACTCCATTCGAAATCGCTTGTC 1366
Query 1269 GTAGTATTGGTTAAAAAATTGCTTCTTATTTTGGATTACTCTATATCTGACTTTAGATGT 1328
|||||||||||||||| ||||||| ||| |||||||||| ||||| ||||||||||||
Sbjct 1367 GTAGTATTGGTTAAAAGATTGCTTTTTAGTTTGGATTACA--ATATCCGACTTTAGATGT 1424
Query 1329 TT 1330
||
Sbjct 1425 TT 1426
Score = 115 bits (62), Expect = 1e-24
Identities = 68/71 (96%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 867 AGCAGGAGTCCTCCTCCATATGAGAAGAGGAGAGAAAGCAGGAGTCCTCCTCCATATGAG 926
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 933 AGCAGGAGTCCTCCTCCATATGAGAAGAGGAGGGAAAGCAGGAGTCCTCCGCCATATGAG 992
Query 927 AAGAGGAGGGA 937
||||| |||||
Sbjct 993 AAGAGAAGGGA 1003
Score = 115 bits (62), Expect = 1e-24
Identities = 68/71 (96%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 828 GAAAGCAGGAGTCCTCCCCCATATGAGAAGAGGAGGGAGAGCAGGAGTCCTCCTCCATAT 887
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 966 GAAAGCAGGAGTCCTCCGCCATATGAGAAGAGAAGGGAAAGCAGGAGTCCTCCTCCATAT 1025
Query 888 GAGAAGAGGAG 898
|||||||||||
Sbjct 1026 GAGAAGAGGAG 1036
Score = 71.3 bits (38), Expect = 2e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 900 GAAAGCAGGAGTCCTCCTCCATATGAGAAGAGGAGGGA 937
||||||||||||||||||||||||||||||||||||||
Sbjct 930 GAAAGCAGGAGTCCTCCTCCATATGAGAAGAGGAGGGA 967
> AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,
At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13024571-13027440
FORWARD LENGTH=1362
Length=1362
Score = 782 bits (423), Expect = 0.0
Identities = 625/721 (87%), Gaps = 19/721 (3%)
Strand=Plus/Plus
Query 11 AGGAAACATGAAGCCTGTCTTTTGCGGGAACTTTGAGTATGATGCTCGTG-AGAGTGATC 69
||||| ||||||||| ||||| || |||||||||||||||||||| || | || |||| |
Sbjct 106 AGGAAGCATGAAGCCAGTCTTCTGTGGGAACTTTGAGTATGATGCGCGCGAAG-GTGACC 164
Query 70 TTGAGCGGCTTTTCA-AAAGATACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTT 128
| || || || |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 165 TGGAACGACTATTCAGGAA-ATACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTT 223
Query 129 GCTTTTGTCTATATGGAAGATGAAAGGGATGCTGAAGATGCCATCCGAGCGCTTGATCGC 188
|||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 224 GCTTTTGTATACATGGAAGATGAAAGGGATGCGGAAGATGCCATCCGAGCACTTGACCGC 283
Query 189 TTTGAATATGGCCGCACGGGACGCAGACTCCGTGTTGAGTGGACAAAGAATGACCGTGGA 248
||||||| ||| || | |||||||||||| |||||||| |||||||||| ||| ||||||
Sbjct 284 TTTGAATTTGGGCGTAAGGGACGCAGACTTCGTGTTGAATGGACAAAGAGTGAACGTGGA 343
Query 249 GGTGCTGGAAGATCAGGTGGT--T-CGAGGAGATCATCGTCTGGCATGAGACCTTCCAAG 305
|||| | |||||| |||||| | | |||||||| || || |||||||||||||||||
Sbjct 344 GGTGATAAAAGATCTGGTGGTGGTTCAAGGAGATCCTCATCCAGCATGAGACCTTCCAAG 403
Query 306 ACTCTGTTTGTGATCAACTTTGATGCACAGAACACTAGGACTCGGGA-CTTGGAGAGACA 364
||||| |||||||| ||||||||||| | || |||||||| ||||| || | ||| |||
Sbjct 404 ACTCTCTTTGTGATTAACTTTGATGCGGATAATACTAGGACCCGGGATCTAG-AGAAACA 462
Query 365 CTTTGAGCCGTATGGAAAAATTGTTAATGTTAGAATCAGAAGGAATTTTGCATTTATCCA 424
|||||||||||||||||| || || || ||||| ||||| ||||||||||||||||||||
Sbjct 463 CTTTGAGCCGTATGGAAAGATCGTAAACGTTAGGATCAGGAGGAATTTTGCATTTATCCA 522
Query 425 ATATGAGTCACAAGAAGATGCCACCAGAGCACTGGATGCTACAAATT-CAAGTAAGCTGA 483
|| ||| ||||||| ||||||||||||||| |||||||| ||||| || |||||||||
Sbjct 523 GTACGAGGCACAAGAGGATGCCACCAGAGCATTGGATGCTTCAAATAACA-GTAAGCTGA 581
Query 484 TGGATAAGGTGATCTCAGTGGAGTATGCAGTGAAAGATGATGATTCGAGAGGAAATGGGT 543
|||||||||||||||| ||||||||||| ||||| ||||||||| | |||||||||||
Sbjct 582 TGGATAAGGTGATCTCGGTGGAGTATGCTGTGAAGGATGATGATGCTAGAGGAAATGGAC 641
Query 544 ACAGTCCTGAAAGACGGCGTGATAGGTCACCTGATAGGAGAAGGCGGTCACCTAGTCCTT 603
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 642 ACAGTCCTGAAAGACGCCGTGATAGGTCACCTGAAAGGAGAAGGCGATCACCTAGTCCTT 701
Query 604 ACAGAAGAGAAAGAGGCAGTCCTGACTATGGCCGAGGAGCTAGTCCAGTAGCT-C--ACA 660
||| |||||||||||| || ||||| |||||||||||||||||||| || ||| | |||
Sbjct 702 ACAAAAGAGAAAGAGGAAGCCCTGATTATGGCCGAGGAGCTAGTCCTGTTGCTGCCTACA 761
Query 661 -AAAGGGAAAGGACTAGTCCTGATTATGGTCGAGGACGACGCAGCCCCAGCCCTTACAAG 719
||||| ||||||| |||||||| ||||||||| | |||| ||||| || |||||||||
Sbjct 762 GAAAGG-AAAGGACCAGTCCTGACTATGGTCGA--A-GACGTAGCCCAAGTCCTTACAAG 817
Query 720 A 720
|
Sbjct 818 A 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65461510680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5