BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495292 Length=2406 Score E Sequences producing significant alignments: (Bits) Value AT5G52230.1 | Symbols: MBD13 | methyl-CPG-binding domain protei... 1615 0.0 > AT5G52230.1 | Symbols: MBD13 | methyl-CPG-binding domain protein 13 | chr5:21207888-21211809 REVERSE LENGTH=2625 Length=2625 Score = 1615 bits (874), Expect = 0.0 Identities = 1265/1443 (88%), Gaps = 70/1443 (5%) Strand=Plus/Plus Query 1005 TGAACCAACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAATAGTGCCTCCTGATGA 1064 |||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1189 TGAACCGACGCTTGAACTGAAGACAAGAACCAAAGTTCAACGAATATTACCTCCTGATGA 1248 Query 1065 TGAACCAACGCCTGATCT---G--AAG-A-C-AAG---AACCAA-AGT---T-C-AACGA 1107 ||||| ||||| || || | ||| | | ||| ||| || ||| | | | || Sbjct 1249 TGAACTGACGCCCGAACTGAAGTCAAGAACCAAAGTTCAACGAATAGTACCTCCTGATGA 1308 Query 1108 -GTAGT-ACCTCCTG-A--T--GATGAG--CC---G-A-AACGAATATTACCTCCTGATG 1153 | | | | | |||| | | || ||| || | | ||| || | |||||||||||| Sbjct 1309 TGAACTGA-CGCCTGAATTTAAGACGAGAACCAAAGTACAACAAAGAATACCTCCTGATG 1367 Query 1154 ATGGCACAGCTGGAAAGTGCAAGCAACCTGTGAATCCTGTTGCTACCAGCGGATTGGAAA 1213 |||||| ||| ||||||||||||||||||||||||| |||| ||||||||||| | ||| Sbjct 1368 ATGGCAGAGCCGGAAAGTGCAAGCAACCTGTGAATCATGTTACTACCAGCGGA-TCAAAA 1426 Query 1214 AA-ATGGATATACC-CTTCAACAAGGAAGTAGCCAAAAGCTATAATGAAC-ATCGCTCTC 1270 || | ||| ||||| | ||||||||||||||||| |||||| |||||||| ||| ||||| Sbjct 1427 AAGACGGAAATACCGC-TCAACAAGGAAGTAGCCCAAAGCTGTAATGAACAATC-CTCTC 1484 Query 1271 AGAAACCATATGCTGTTGCTG---CAAGCAACAATCGTGTGAGTCCAGAAAT-GGTAGTG 1326 |||||||| |||||| ||||| |||||||||||||||||||| ||| | | || |||| Sbjct 1485 AGAAACCACATGCTGCTGCTGCAACAAGCAACAATCGTGTGAGTGCAG-ATTCGGCAGTG 1543 Query 1327 GGAACACAAAATATCGGTAAACCAGTAGGCAGAAAGCCTTCTTCAGACAAGAAGACAATG 1386 |||| |||||||||||||||| |||||||||| ||||||||| |||||||||||| || Sbjct 1544 GGAATACAAAATATCGGTAAAGCAGTAGGCAGGAAGCCTTCTAAAGACAAGAAGACGCTG 1603 Query 1387 AAAACGCCAATGATAGTATATGAACTGAATCCAGTTTTTCATCTTGAGGGTTACAAGCAG 1446 ||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1604 AAATCACCACTGATAGTATATGAACTGAATCCAGTTTTTCATCTTGACGGTTACAAGCAG 1663 Query 1447 AAGGAAGAAAGGTCGCCCGTGTCACCGTTGTCTTGCCAAACTTCTGCAACAAAGTGTGAG 1506 |||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1664 AAGGAAGAAATGTCACCTGTGTCACCGTTGTCTTGCCAAACTTCTGCAACAAAGTGTGAG 1723 Query 1507 AAGACAGCAGCAGGCAAAAGATTGGGACGGTCTAGTCCAAAGGCTAAACTTACTACCAGT 1566 ||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||||||| Sbjct 1724 AAGACAGCAGCAGGCAAAAGAGTGGGAAGGTCTAGCCCAAAGGCTAACCTTACTACCAGT 1783 Query 1567 GTGAAACCAACTCAGATCTCGCCTTTGAGATCATCAAATAAAGGAAAGCATCCGCATCCT 1626 |||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||| Sbjct 1784 GTGAAACCAACTCAGATCTCGCCTCTGAGATCACCAAATAAAGGAAAGCAACCACATCCT 1843 Query 1627 TCTGATAGTGGTAATGCTATTCAAACGAGAAATAAATTAGGTAACGAGTTAT-CTAACTC 1685 ||||| |||||| ||| ||||||| |||||||||| ||| ||| |||| || ||||||| Sbjct 1844 TCTGACAGTGGTTCTGCCATTCAAAGGAGAAATAAACTAGCTAATGAGT-ATTCTAACTC 1902 Query 1686 ATCTGTTGTAAAAGGCACATGCTCAGAAGTGATGGAGAAGAATACCAACAGCTTCTCATC 1745 ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 1903 ATCCGTTGTAAGAGGCACATGCTCAGAAGTGATGGAGAAGAGTACCAACAGCTTCTCCTC 1962 Query 1746 CGCATTTGACTCTACTCTTGCAGATCTTTGGAAAGATCCTTGCATCGCCTTTGCTATCAA 1805 ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1963 TGCATTTGACTCGACTCTTGCAGATCTTTGTAAAGATCCTTGCATTGCCTTTGCTATCAA 2022 Query 1806 AACACTGACTGGAGAATCGCTGTGCCTTCCCAACACGCCAGCGATCTCTTCTGATCCCAT 1865 ||| || || |||||||| ||||| |||| |||||| ||||||||||||||| ||||||| Sbjct 2023 AACTCTAACCGGAGAATCTCTGTGTCTTCTCAACACTCCAGCGATCTCTTCTAATCCCAT 2082 Query 1866 TAATAATCACGCCAAGCAGAAAGGAGTCTCCTCTATCCCAGAGACGTCCAG-AAATGTTA 1924 ||| || ||| ||||||||||||||||||||| || ||||||||| ||||| |||||||| Sbjct 2083 TAACAACCACACCAAGCAGAAAGGAGTCTCCTTTACCCCAGAGAC-TCCAGGAAATGTTA 2141 Query 1925 ACACAGGCTCTGAAAACCAGGGATTTCCGAGTACACTCCCGGGTACAGATATCTGGCAAG 1984 ||||| |||||||||| | || |||||||||| ||| ||||||| || |||||||||||| Sbjct 2142 ACACATGCTCTGAAAAACTGGTATTTCCGAGTCCACCCCCGGGTGCAAATATCTGGCAAG 2201 Query 1985 ACCCGTGTATCGACTTTGCTATAAAAACCCTGACAGGCGCAATCCCGATCGGGTTAGATG 2044 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 2202 ACCCGTGTATCGACTTTGCTATAAAAACTCTAACAGGCGCAATCCCGATCGGGTTAGATG 2261 Query 2045 AACCAGATACCAAGTCAAAGTC-CGAGGGGATGACGA-TAACTACAGCAGCAACGCAAGA 2102 |||||||||| ||||||||||| | ||||||||||| || ||||||||||||| ||||| Sbjct 2262 AACCAGATACGAAGTCAAAGTCAC-AGGGGATGACGTCTA-CTACAGCAGCAACACAAGA 2319 Query 2103 AGCTAAAGGTAGGCAAAACAACTGTGATTATATGGTTCAACAATGTAACATGAAGAACAA 2162 |||||||||||||||||||||||||||||||||| | | | |||| | || | Sbjct 2320 AGCTAAAGGTAGGCAAAACAACTGTGATTATATG----A-C---G-AACA--A-GA-CT- 2365 Query 2163 GACTGCTGGTAAACCTCAGGATCTAAGGTTTACACAATCTTTCTCTAAGGACTAACAATA 2222 | | ||||||||| | ||||||||||||||||||||||||||||||||||||||| | Sbjct 2366 G--TA--GGTAAACCTGATGATCTAAGGTTTACACAATCTTTCTCTAAGGACTAACAAGA 2421 Query 2223 ACAAAATAAAACCTAGTGTACTTTTAGGTGTTTTCGTATATTAGGGTTTTTGATAATGCC 2282 |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2422 ACAAAATAAAGCCTACTGTACTTTTAGGTGTTTTCGTATATTAGGGTTTTTGATAATGCC 2481 Query 2283 ATGGGTATAGTGTTAAGATCCATGTGCAATGCCTTAGCTTTATTTTCTTTCGGGTCATGT 2342 || ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2482 ATTGGTATCGTGT-AAGATCCATGTGCAATGCCTTAGCTTTATTTTCTTTCGGGCCATGT 2540 Query 2343 TCTGTTGTAAATACATATGTATTAGTGTTGTGTATCGACAGAACCTGGAAAAACTCATAA 2402 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2541 TCTGTTGTAAATACATATGTATTAGTGTTGTGTATCGACAGAACCTTGAAAAACTCATAA 2600 Query 2403 AAA 2405 ||| Sbjct 2601 AAA 2603 Score = 1430 bits (774), Expect = 0.0 Identities = 1038/1158 (90%), Gaps = 48/1158 (4%) Strand=Plus/Plus Query 1 AAATCACACAATCAGACAAAAT-AAAAGGTTCCTTCTTTATAACTTCCGACGGTGTCCAT 59 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 AAATCACACAATCAGACAAAATAAAAAGGTTCCTTCTTTATAACTTCCGACGGTGTCCAT 60 Query 60 TATCCGAATCTGACAATTCTTGATGGGTTTTGGCGTTTTTTGTTGAGAAACCATTCTGGG 119 |||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||||| | Sbjct 61 TATCTGAATCCGACAATTCTTGATGGGTTTTGGCGTTTTGAGTTGATAAACCATTCTGAG 120 Query 120 TTGCGAATCAGGGATTTAAGAGAGAGAGGAAAGTGGTTTTCCGGTGACCGGAGAAATGAA 179 ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 121 TTGTGAATCAGGGATACAAGAGAGAGAGGAAAGTGGTTTTACGGTGACCGGAGAGATGAA 180 Query 180 TGGAGAAGGGATCTCTGATGGTTTATCGGCTGAGCCTGAGAGGAAAGTGGAAATCAGAGT 239 |||||||||||||||||||| || | | | | | ||||||||||||||||||| ||||| Sbjct 181 CGGAGAAGGGATCTCTGATGG-TT-T-GTC-G-G-CTGAGAGGAAAGTGGAAATTAGAGT 234 Query 240 GAGGAAGAATGGGAGAAAGGATAAGGTTATAGTTGAGAAATCTGCAGCTCAAGGCTTACC 299 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 235 GAGGAAGAATGGGAGAAAGGATAAGGTTATAGTTGAGAAATCTGCTGCTCAAGGTTTACC 294 Query 300 TGAAGGATGGATCAAGAAGCTTGAAATAACAAACAGATCAGGCCGTAAAAACAGAAGAGA 359 |||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| Sbjct 295 TGAAGGATGGATCAAGAAACTTGAAATAACAAATAGATCAGGCCGTAAAACCAGAAGAGA 354 Query 360 TCCATTCTTCATTGACCCTAAAAATGAGTATATCTTTCAATCGTTCAAAGACGCATCACG 419 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 355 TCCATTCTTCATTGACCCTAAAAGTGAGTATATCTTTCAATCCTTCAAAGACGCATCACG 414 Query 420 GTATGTTGAGACTGGCAATATTGGACATTATGCACGTAAATTGAAGGAAAGCGATATCGA 479 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 415 GTATGTTGAGACTGGCAATATTGGACATTATGCACGTAAATTGAAAGAAAGTGATATCGA 474 Query 480 AGATGATGATTCTGGAAATGGAAAGACCGTCCTTCGTCTGGAGTATGTGGAAAAGAAATC 539 |||||||||||| |||||||||||||| || |||||||||||||||||||| |||| ||| Sbjct 475 AGATGATGATTCCGGAAATGGAAAGACTGTTCTTCGTCTGGAGTATGTGGACAAGAGATC 534 Query 540 TGCAGATGATTTATTGGAAAAGGAGAAAAAGATAGATATTCATGTCAGAAAAAGTAAACG 599 |||||||||| |||||||||| ||||||| ||||||| ||||||||| ||||||||| Sbjct 535 TGCAGATGATGTATTGGAAAAAGAGAAAACGATAGATG---ATGTCAGAAGAAGTAAACG 591 Query 600 GAGAAACTTATCTTCTTCTGATGAACATTCCAAGAATTATAAAATGAATTCTGA-TTGGA 658 |||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| | Sbjct 592 GAGAAACTTATCTTCTTCTGATGAACATTCCAAGAATTGTAAAATGACTTCTGACTTG-A 650 Query 659 GCATCGTAACCTCACCAGTTCTTCAGGC---G---AA-A-G-A-----T-------CCTA 697 |||| |||||||||| ||||||| ||| | || | | | | |||| Sbjct 651 GCATTGTAACCTCACAAGTTCTTGAGGATTTGGGGAAGAAGGAAGAGGTGAAAGATCCTA 710 Query 698 TCGAAAAGCAGCCCATAGTGAAACGGGTTACTAGGAGCCAATCTAAAGCCAGTACGAATG 757 |||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||||| || Sbjct 711 TCGAAAAGCAGCTCATAGCGAAACGGGTTACTAGAAGCCAAACTAAAGCCAGTACGACTG 770 Query 758 AGGAAGTCGT---AGATATAAAAAGGAAAAACTTGTCTTCATCAAATGCAAAATCAGAAA 814 |||||||||| |||| ||||||| ||| || |||||||||||||||||||||||||| Sbjct 771 AGGAAGTCGTCGTAGATTTAAAAAG-AAAT-CT-GTCTTCATCAAATGCAAAATCAGAAA 827 Query 815 AAGATTTTGTAAAATCGAGGTTGAGCAGTGCAAGGTCACAAAAACCAAAGAAGGAATCTC 874 |||||| |||||| || || | | | ||||||||||||||||||||||||| || Sbjct 828 AAGATTCTGTAAACTCCAG-T-G-----T--AAGGTCACAAAAACCAAAGAAGGAAGCTG 878 Query 875 TTTTGAAGGAAGAAGAGGAACAAGATTCTACTAAAAAACAGCTTACAAGGAGTAAAGCTA 934 || |||||||||||||||||||||||||| || | |||| | | ||||||||||||| | Sbjct 879 TTATGAAGGAAGAAGAGGAACAAGATTCTTCTGAGAAACGGATCACAAGGAGTAAAGTTG 938 Query 935 AAGTGAAGACGAATGAGTTAAGTAATAGTGTAGCCCGACGAACATCAAAACGATTAGCTG 994 ||| ||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 939 AAGAGAAGAAGAATGAGCTAAGTAATAGTGTAGCCCGACGAACATCAAAACGGTTAGCTG 998 Query 995 GTATTGAGCTTGAACCAACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAATAGTGC 1054 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 999 GTATTGAGCTTGAACCAACGCCTGAACTGAAGACAAGAGCCAAAGTTCAACGAATAGTAC 1058 Query 1055 CTCCTGATGATGAACCAACGCCTGATCTGAAGACAAGAACCAAAGTTCAACGAGTAGTAC 1114 | | |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1059 CGCTTGATGATGAACCGACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAGTAGTAC 1118 Query 1115 CTCCTGATGATGAGCCGA 1132 | ||||||||||| |||| Sbjct 1119 CGCCTGATGATGAACCGA 1136 Score = 187 bits (101), Expect = 4e-46 Identities = 119/128 (93%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1005 TGAACCAACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAATAGTGCCTCCTGATGA 1064 |||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||| Sbjct 1069 TGAACCGACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAGTAGTACCGCCTGATGA 1128 Query 1065 TGAACCAACGCCTGATCTGAAGACAAGAACCAAAGTTCAACGAGTAGTACCTCCTGATGA 1124 |||||| |||||||| |||||||||||||||||| |||||||| |||||||||||||||| Sbjct 1129 TGAACCGACGCCTGAACTGAAGACAAGAACCAAAATTCAACGAATAGTACCTCCTGATGA 1188 Query 1125 TGAGCCGA 1132 ||| |||| Sbjct 1189 TGAACCGA 1196 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 119477297100 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5