BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495294 Length=1306 Score E Sequences producing significant alignments: (Bits) Value AT5G52250.1 | Symbols: RUP1 | Transducin/WD40 repeat-like super... 2074 0.0 > AT5G52250.1 | Symbols: RUP1 | Transducin/WD40 repeat-like superfamily protein | chr5:21216855-21218226 FORWARD LENGTH=1372 Length=1372 Score = 2074 bits (1123), Expect = 0.0 Identities = 1251/1312 (95%), Gaps = 11/1312 (1%) Strand=Plus/Plus Query 1 ATAGTTTCTTGTGGACCTAACAAAAACTAGTCTTAACTCATTCATGGAGGCTTTGTTCTG 60 |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATAGTTTCGTGTGGACCTAACTAAAACTAGTCGTAACTCATTCATGGAGGCTTTGTTCTG 60 Query 61 CTCTGAGATACCCAACAACAACATCAGATCTTCCATTAACGATC--TC-TCTTCTTCTTC 117 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 61 CTCTGAGATACCCAACAACAACATCAGATCTTCCATTAACGATCTATCTTCTTCTTCTTC 120 Query 118 ATATACATGGCCAATGATCATGACCTCCTCTTCTACTTCTTCTTCATCTCCCACAATCAT 177 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 121 ATATACATGGCCAATGATCATGACCTCCTCTTCTTCTTCTTCTTCATCTCCCACAATCAT 180 Query 178 GAACATAGAGAACATTCCTAGATGCGACTGGGAtctctctctctcCGCCGTCGTTTCCTC 237 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 181 GAACATAGAGAACATTCCTAGATGCGACTGGGATCTCTCTCTTTCCGCCGTTGTTTCCTC 240 Query 238 CGCATCCACTGGATCAGACGCTATCGGAGCAATCGAGTTTGACCCTACCGGAGAGATCAT 297 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 241 CGCATCCACCGGATCAGACGCTATCGGAGCAATCGAGTTCGACCCTACCGGAGAGATCAT 300 Query 298 AGCTACTGGAGGGATCGCGAGAAAGATCAGATGGTATCGTTTAAGCTCTTTGTTAGAGTC 357 |||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 301 AGCTACGGGAGGAATCGCAAGAAAGATCAGATCGTATCGTTTAAGCTCTTTGTTAGAGTC 360 Query 358 ACGTGACGATCACGTAACAGCTTCAGAGAGCTGTATCTGCACGCCAGCGAAGCTTAGTAG 417 |||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| Sbjct 361 ACGTGACGATCACGTAACAGCTTCAGAGAGCTATATTTGCACGCCGGCGAAGCTTAGTAG 420 Query 418 TCTCAAATGGAGACCCGATTTATCCGGTCGGGTTATCGGGTCAGGAGATTACGACGGAGT 477 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 421 TCTCAAATGGAGACCCGATTTTTCCGGTCGGGTTATCGGGTCAGGAGATTACGACGGAGT 480 Query 478 TGTCACAGAGTACGACGTTGAGAAACAAGTGCCTGTTTCCGAGAGAGACGAGCATGGAGG 537 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TGTCACCGAGTACGACGTGGAGAAACAAGTGCCTGTTTCCGAGAGAGACGAGCATGGAGG 540 Query 538 TAGAAGGATTTGGAGCGTAGACTACACGCTCTACAATGGCTCTCTTATAGGCGCGTCAGG 597 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 541 TAGAAGGATTTGGAGCGTGGACTACACGCTTTACAATGGCTCTCTTATAGGCGCGTCAGG 600 Query 598 CTCCGACGACGGAACGGTTCAAATGTGGGATCCACGTAACGGAGGGACGTTGGAAGAAAC 657 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 601 CTCCGACGACGGAACGGTTCAAATGTGGGATCCACGTAACGGAGGGACGTTAGAAGAAAC 660 Query 658 GGTTAGGCCCGGAGGTGGAGCGGCGATTTGTTCGGTAGAGTTTGATCCATTCGGTGGATC 717 |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 661 GGTTAGGCCCGGTGGTGGAGCGGCGATTTGTTCGGTAGAGTTCGATCCGTTCGGTGGATC 720 Query 718 TTCTTTAGCCGTTGGATGTGCTGACCGGAATGCTTACGTGTACGACATCAGACGACTCGT 777 ||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||| || Sbjct 721 TTCCATAGCCGTTGGATGTGCTGACCGGAATGCCTACGTGTATGACATCAGAAGACTAGT 780 Query 778 TGACCCTTTGATCGTATTAGACGGTCATACCAAAACGGTGACGTATGCTCGGTTCTTGGA 837 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| Sbjct 781 GGACCCTTTGATCGTATTAGACGGCCATACCAAAACGGTGACGTATGCTCGATTCATGGA 840 Query 838 TTCTCACACGATCGTTACCGGTTCGACCGACGGGAGCTTGAAGCAATGGGATATAGATAA 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 TTCTCACACGATCGTTACCGGTTCGACCGACGGGAGCTTGAAGCAATGGGATATAGATAA 900 Query 898 TGGACGGCGCGTGGTTCGCACGTACCGAGGGCATGTTAATAGCCGGAACTTTGTTGGGTT 957 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 901 TGGACGGCGCGTGGTTCGCACGTACCGAGGGCATGTGAATAGCCGGAACTTTGTTGGGTT 960 Query 958 GTCGGTTTGGAGACATGGTGGTTTGGTCGTGTCTGGGTCGGAGAATAACCAAGTGTTTGC 1017 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 961 GTCGGTTTGGAGACATGGTGGTTTGGTCGTGTCCGGGTCAGAGAATAACCAAGTGTTTGT 1020 Query 1018 GTACGATAAGAGGTGGGAGGAACCGGTTTGGGTTTGTGGATTGGGTCA-ACCGGACCGGT 1076 |||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| Sbjct 1021 GTACGATAAGAGGTGGGAGGAACCGGTTTGGGTTTGTGGATTGGGTCATAC-GAACCGGT 1079 Query 1077 TTG-AGGCTGACCGACGGTTTGTGAGTAGTGTTTGTTTGAGACAAGTGGATGAAGACTGG 1135 ||| | |||||||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 1080 TTGGAT-CTGACCGACGGTTTGTTAGTAGTGTGTGTTTGAGACAAGTGGATGAAGATTGG 1138 Query 1136 TGCACACTTGCTG-CTGGAGGATCCGATGGGGCTTTAGAGATTTTCTCGGGCAAACGGAG 1194 |||||||||| || | ||||||||||||||||||||||| |||||||||||||||| || Sbjct 1139 TGCACACTTG-TGGCCGGAGGATCCGATGGGGCTTTAGAAATTTTCTCGGGCAAACAAAG 1197 Query 1195 CTAATCAGTATTTATATTAtttttttCTGCTCATGATTGATACAAACTGTTTTTCAGTTG 1254 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1198 CTAATCAGTATTTATATTATTTTTTTCTGCTCATGATTAATACAAACTGTTTTTCAGTTG 1257 Query 1255 ATTTTATAAACGGTCTATAGTTATTAATTTTAATTTGATTGAATGTTACTAC 1306 |||||||| | |||||||||||||||||||||| ||||||||||||||||| Sbjct 1258 ATTTTATA--CTGTCTATAGTTATTAATTTTAATATGATTGAATGTTACTAC 1307 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64256697600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5