BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495299
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:212... 1585 0.0
AT5G52310.1 | Symbols: COR78, LTI78, RD29A, LTI140 | low-temper... 161 2e-38
> AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:21237056-21239529
FORWARD LENGTH=2134
Length=2134
Score = 1585 bits (858), Expect = 0.0
Identities = 1096/1210 (91%), Gaps = 20/1210 (2%)
Strand=Plus/Plus
Query 511 CTGCTCCAGGAGGAGGTTCGGATTATCTTAGTGGTGTATCTAATTATCAGTCCAAAGTTA 570
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 850 CTGCTCCAGGAGGAGGATCGGATTATCTCAGTGGTGTATCTAATTATCAGTCCAAAGTTA 909
Query 571 CTGATCCCACTCATAAAGGTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTAGTC 630
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 910 CTGATCCCACGCATAAAGGTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTGGTA 969
Query 631 GGATGAAAGTGACTGATGAGTCTCCTGATCAGAAATCAAGACAAGGATTTGGAGAAGACT 690
| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 970 GAATGAAAGTGACTGATGAGTCTCCTGATCAGAAATCAAGACAAGGACGCGAAGAAGACT 1029
Query 691 TACCGACGAGAAGCCAAGAATTTGGTCTGAAGAACGAATCTGATATCAGCAAGGATTCTC 750
| |||||||||||||| || |||| ||||||||| ||||||||||||| |||| ||||||
Sbjct 1030 TTCCGACGAGAAGCCATGAGTTTGATCTGAAGAAGGAATCTGATATCAACAAGAATTCTC 1089
Query 751 CGGCAAGACTTGGAGGAGAATCAAGAGCTGGTCTCGG-GGAAGATTTTCAGAGAAGAAGT 809
|||||||| ||||||| ||||||| |||||| | || ||||||||||| || ||| ||
Sbjct 1090 CGGCAAGATTTGGAGGGGAATCAAAAGCTGGGAT-GGAGGAAGATTTTCCGACAAG-AG- 1146
Query 810 GATGATGTGAAAGCAGAGACTGGGTTGGGAAGAGACTTACCGACCGGAACTCATGATCAG 869
| ||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||
Sbjct 1147 G-TGATGTGAAAGTAGAGAGTGGATTGGGAAGAGACTTACCGACGGGAACTCATGATCAG 1205
Query 870 TTCTCACCGGAACTATCTCGTCCTAAAGAGAGAGATGATTTTGAGGAAACCAGAGATGAG 929
|||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||
Sbjct 1206 TTCTCACCAGAACTATCTCGTCCCAAAGAGAGAGATGATTCTGAGGAAACCAAAGATGAG 1265
Query 930 ACGAAACAGGAGAGGAAACCGAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCC 989
||| ||| |||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1266 TCGACACATGAGACAAAACCAAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCC 1325
Query 990 ATAACCAACAAAGCTATAGCGGCTAAGAACGTCGTCGCCTCAAAGCTAGGTT--A-CGGA 1046
||||| |||||||||||||| || ||||||||||| |||||||||||||||| | ||||
Sbjct 1326 ATAACTAACAAAGCTATAGCCGCAAAGAACGTCGTTGCCTCAAAGCTAGGTTACACCGGA 1385
Query 1047 GA-AAGCGGCGGCGGGCAATA-CGAAAGCGCTG-AAAAGGATGAAACTCCGAGGTCTGCT 1103
|| || |||||||||||| | ||| ||| ||| |||| |||||||||||||| |||| |
Sbjct 1386 GAGAA-TGGCGGCGGGCAA-AGCGAGAGCCCTGTAAAA-GATGAAACTCCGAGATCTGTT 1442
Query 1104 ACGGGTTATGGGCAGAAAGTGGCGGGAACTGTTGCTGAGAAGTTGACTCCGGTCTACGAA 1163
|| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1443 ACTGCTTACGGGCAGAAAGTGGCGGGAACTGTTGCTGAGAAGTTGACTCCGGTTTACGAA 1502
Query 1164 AAGGTCAAAGAGACAGGATCAGCCGTGATGACGAAGCTACCTATCTCCGGAGGTGGAAGT 1223
|| |||||||| ||||||||| | |||||||| ||||||||| |||||||||||||||||
Sbjct 1503 AAAGTCAAAGAAACAGGATCAACGGTGATGACAAAGCTACCTCTCTCCGGAGGTGGAAGT 1562
Query 1224 GGAATGAAGGAGACGCAACAAGGTGAAGAGAAAGGTGTGTCGACTAGAGATTATCTATCG 1283
||| ||||||||||||||||||| ||||||||||||||| || ||| | ||||| ||||
Sbjct 1563 GGAGTGAAGGAGACGCAACAAGGGGAAGAGAAAGGTGTGACGGCTAAAAATTATATATCA 1622
Query 1284 GAGAAGCTGAGACCTGGAGAAGATGACAAAGCTTTATCGGAGGTGATAGCTGAGAAACTT 1343
|||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1623 GAGAAGCTGAAACCTGGAGAAGAGGACAAAGCTTTATCGGAAATGATAGCTGAGAAACTT 1682
Query 1344 CATTTTGGAGGAGGA-GA-A-AAGAAGACAACGGCGACAAAGGAGGTGGAAGTGACGGTG 1400
||||||||||||||| || | |||||||||||||| |||||||||||||||||||||||
Sbjct 1683 CATTTTGGAGGAGGAGGAGAGAAGAAGACAACGGCTACAAAGGAGGTGGAAGTGACGGTT 1742
Query 1401 GAGAAGATACCTTCCGACCAGATATCGGAGGGGAGAGAACATGGTGAGGCGGTTACTGAG 1460
|||||||||||||||||||||||| ||||||||| || |||||||||||||||| | |||
Sbjct 1743 GAGAAGATACCTTCCGACCAGATAGCGGAGGGGAAAGGACATGGTGAGGCGGTTGCAGAG 1802
Query 1461 GAAGGGAAA---GAAGAAGGAATGGTGGGGAAAGTTAAAGGAGCGGTCACTTCTTGGCTC 1517
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 GAAGGAAAAGGTGGAGAAGGAATGGTGGGGAAAGTTAAAGGAGCGGTCACTTCTTGGCTC 1862
Query 1518 GGTGGTAAGCCGAAATCGCCACATTCAGTTGAAGAGTCTCCACAATCACTTGGCACCACC 1577
|||||||| ||||| ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1863 GGTGGTAAACCGAAGTCGCCACGGTCCGTTGAAGAGTCTCCACAATCACTTGGCACCACC 1922
Query 1578 GTTGGGACTATGGGGTTTACGGATTCCAGTGGAAGTAAGTTGGGTGGTACTGGCGGAGCT 1637
|||||||||||||||||| |||||||| |||||||| ||||||| || | |||||||| |
Sbjct 1923 GTTGGGACTATGGGGTTTTCGGATTCCGGTGGAAGTGAGTTGGGAGGCAGTGGCGGAGGT 1982
Query 1638 AAGGGAGTTCAAGATTCTGGGAACTGAAGATTTGGGGTTTTTCCTTCGAATGTCTGTGTT 1697
||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||
Sbjct 1983 AAGGGAGTTCAAGATTCTGGGAACTGAAGATTTGGGGTTTTGCTTTTGAATGTTTGTGTT 2042
Query 1698 TTTGTATGAT 1707
||||||||||
Sbjct 2043 TTTGTATGAT 2052
Score = 760 bits (411), Expect = 0.0
Identities = 484/519 (93%), Gaps = 5/519 (1%)
Strand=Plus/Plus
Query 1 AAGAAAACAACGCTAGAACAAAGAGAGTTTGATTGATTCACTTGAAAAAAGAGAAAACAC 60
||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 80 AAGAAAACAACACTAGAACAAAGAGGGTTTGATTGATTCACTTG-AAAAAGAGAAAACAC 138
Query 61 AGCTTTGGAAAATGGAGTCGCAGTTGACACGTCCTTATGGTCATGAGCAAGTAGAAGAAC 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 139 AGCTTTGGAAAATGGAGTCACAGTTGACACGTCCTTATGGTCATGAGCAAGCAGAAGAAC 198
Query 121 CAATCAGAATTCACCATCCTGAGGAAGACGAGCATCATGATAAGGGAGCATCTAAAGTGT 180
||||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||||||
Sbjct 199 CAATCAGAATTCACCATCCAGAAGAAGAAGAGCATCATGAGAAGGGAGCATCCAAAGTGT 258
Query 181 T-AAGAAAAGTAAAAGAAAAAGCTAAGAAGATCAAGAACAGTCTCACTAAACATGGCAAT 239
| ||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 259 TGAAG-AAAGTAAAAGAAAAGGCTAAGAAAATCAAGAACAGTCTCACTAAACATGGAAAT 317
Query 240 GGTCATGATCACGATGTTGAAGAAGAAGAAGATGAGTATGACGAGCAAGACCCAGAAGAG 299
||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||
Sbjct 318 GGTCATGATCACGATGTGGAAGATGATGATGATGAGTATGACGAGCAAGACCCAGAAGTT 377
Query 300 CACGGAGCACCAGTGTATGAATCCTCTGCCGTGAGAGGTGGTGTAACGGGTAAACCTGAG 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 378 CACGGCGCACCAGTGTATGAATCCTCTGCCGTGAGAGGTGGTGTAACGGGTAAACCTAAG 437
Query 360 TCT-TTAAGTCATACCGGAGAAACTAATGTTCCAGCACCGGAGGAGATTGTTCCTCCAGG 418
||| ||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 438 TCTCTTA-GTCATGCCGGAGAAACTAATGTTCCGGCATCGGAGGAGATTGTTCCTCCAGG 496
Query 419 AACAAAGGTTTTTCCTGTCGTGTCTTCCGAGCACACCAAACCCATTGAGCCTGTTTCATT 478
||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 497 GACAAAAGTTTTTCCTGTCGTGTCTTCTGACCACACCAAACCCATTGAGCCTGTATCATT 556
Query 479 ACAAGATACCTCTTACGGACATGAGGCACTGTCTGCTCC 517
||||||||||||||||||||||||||||||| ||| |||
Sbjct 557 ACAAGATACCTCTTACGGACATGAGGCACTGGCTGATCC 595
> AT5G52310.1 | Symbols: COR78, LTI78, RD29A, LTI140 | low-temperature-responsive
protein 78 (LTI78) / desiccation-responsive
protein 29A (RD29A) | chr5:21240849-21243613 FORWARD LENGTH=2500
Length=2500
Score = 161 bits (87), Expect = 2e-38
Identities = 158/190 (83%), Gaps = 14/190 (7%)
Strand=Plus/Plus
Query 527 TTCGGATTATCTTAGTGGTGTATCTAATTATCAGTCCAAAGTTACTGATCCCACTCATAA 586
||| || ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 725 TTCAGACTATCTTAGTGGTGTATCTAATTATCAGTCCAAAGTTACTGATCCCAC-C--AA 781
Query 587 AGGTGGAGAAGCT---GGAGTACCAGAGATTGCTGAGTCTCTTAGTCGGATGAAAGTGAC 643
| | |||| || |||||||| ||||||||||||||| || || ||| |||||||
Sbjct 782 A---GAAGAAACTGGAGGAGTACCGGAGATTGCTGAGTCTTTTGGTAATATGGAAGTGAC 838
Query 644 TGATGAGTCTCCTGATCAGAAATCAAGACAAGGATTTGGA-GAAGACTTACCGACGAGAA 702
||||||||||||||||||||| || ||||| |||| | || ||||| |||||||||
Sbjct 839 TGATGAGTCTCCTGATCAGAAGCCAGGACAA---TTTGAAAGA-GACTTGTCGACGAGAA 894
Query 703 GCCAAGAATT 712
|| |||||||
Sbjct 895 GCAAAGAATT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84387116145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5