BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495312
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52420.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1291 0.0
> AT5G52420.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G23920.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:21281773-21282806 FORWARD LENGTH=1034
Length=1034
Score = 1291 bits (699), Expect = 0.0
Identities = 884/967 (91%), Gaps = 37/967 (4%)
Strand=Plus/Plus
Query 1 ACATTTTCCCGAGaaaa-aaaaaaaTCCTTAACAGTACACCAAAACAATGTCTGGAGGTG 59
||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||
Sbjct 1 ACATTTTCCCGAGAAAACAAAAAAA--AAAAAC-TTACACCAAAACGATGTCTGGAGGTG 57
Query 60 TCGGTCCAACGTACAACGACATAACCTTA-CC----AA-AAGAAGAACAACATCAAACCC 113
||||||||||||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct 58 TCGGTCCAACGTACAACGACATAACCTTACCCAAAGAAGAAGAAGAAGAACATCAAACCC 117
Query 114 AA---ACCTCAACAGTATCATCCACCGGAAAACCCGCCGGATTCTTCTCATTCCGACAAC 170
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AATCCACCTCAACAGTATCATCCACCGGAAAACCCGCCGGATTCTTCTCATTCCGACAAC 177
Query 171 TAAACATCCTTGCAATAATCATCGTTCTCTCCGCAAGTGGTCTCGTAACAATCCAAGATT 230
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TAAACATCCTCGCAATAATCATCGTTCTCTCCGCAAGTGGTCTCGTAACAATCCAAGATT 237
Query 231 TCATATTCACAATCCTCACTCTCATCTACTTCTTCGTCTTCTCAAAACTAATCTTCCCTC 290
|||||||||| |||||||||||||||||||||||| || |||| ||||| |||||||| |
Sbjct 238 TCATATTCACGATCCTCACTCTCATCTACTTCTTCTTCCTCTCGAAACTTATCTTCCCAC 297
Query 291 CACACAACAATCCAAACCGTGACGCTCCTCTCACAAGCTCCACAAACAAAATCTTCCGTA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CACACAACAATCCAAACCGTGACGCTCCTCTCACAAGCTCCACAAACAAAATCTTCCGTA 357
Query 351 TCTATGTAACATCGGCGGGGATCGTCGGACTTATAATTCCGATCTGTTACATATTCGAAG 410
||||||| ||| |||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 358 TCTATGTTACAGCGGCGGGGATCGTCGGGCTTATCATTCCGATCTGTTACATCTTCGAAG 417
Query 411 GAATCGTGGAGGATGATAAGAACGGTGTGAGCGCAGCTGCACCGCACGTGTTTCTTTTAG 470
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 418 GAATCGTTGAGGATGATAAGAACGGTGTTAGCGCAGCTGCACCGCACGTGTTTCTTTTAG 477
Query 471 CGTGTCAGGTTTTTATGGAAGGATTGGCGTCGATGTTTGGCTTCTCTGCTCCGGCGAGGA 530
|| ||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 478 CGAGTCAGATTTTTATGGAAGGATTAGCGACCATGTTTGGCTTCTCTGCTCCGGCGAGGA 537
Query 531 TTCTTGTTCCGATTGTTTATAACGCCAGGAGGGTTTTGACTCTTGTGGAGTGGATTATGA 590
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTCTTGTTCCGATTGTTTACAACGCCAGGAGGGTTTTGACTCTTGTGGAGTGGATTATGA 597
Query 591 GTGAGTTCTCGAGGGAGGATGGGACGGGGACGGTTTCGGCGCGGCGGATGTACGCCGGAA 650
||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |
Sbjct 598 GTGAGTTCTCGAGGGAGGATGTGACGGGGACGGTTTCTGCGCGGCGGATGTATGCCGGGA 657
Query 651 AAGTTTTGGCGGCGG-TGAATTTAGGGATTTGGTCGTTTAATCTCTTTGGTGTTTTGATT 709
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AAGTTTTGGCGGCGGCT-AATTTAGGGATTTGGTCGTTTAATCTCTTTGGTGTTTTGATT 716
Query 710 CCGGTTTATCTACCGAGAGC-TTTCAAGAGGTATTACGGTTCTGATAAGGAGAATTGAAA 768
|||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||
Sbjct 717 CCGGTTTATCTACCCAGAGCGTTT-AAGAGGTATTACGGTTCTGATAAGGAGGATTGAAA 775
Query 769 -CCCGGTTTAGTTCCGGTTCTGATAAGGAGAATTGAAACCCGGTTTAGTTCCGGTT-TAG 826
||||||||||||||||||| ||||||||| | |||||||||||| |||| || | |
Sbjct 776 TCCCGGTTTAGTTCCGGTTCCAATAAGGAGAGTCAAAACCCGGTTTAATTCCT-TTGTGG 834
Query 827 TTTC-CAGCTCTGGTTGTTTTCTTTCCCAttttt-ttCTGTATAATTATTT-GATGTTTT 883
|| | ||||||| ||||||||| || ||||| ||||||||| |||||| ||||||||
Sbjct 835 TT-CACAGCTCTTGTTGTTTTC---CC--TTTTTGTTCTGTATA-TTATTTCGATGTTTT 887
Query 884 CTTT-GAACAATCCAGTTTATGTAGT--T-CACAGT-GTTGTTAGATTTCTTATGA-AAG 937
|||| ||||||| ||||||||||||| | |||||| || |||||||||||| || ||
Sbjct 888 CTTTTGAACAATTCAGTTTATGTAGTAGTTCACAGTTGTA-TTAGATTTCTTACGATAAT 946
Query 938 AACAGAA 944
||| |||
Sbjct 947 AACCGAA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5