BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495319 Length=2190 Score E Sequences producing significant alignments: (Bits) Value AT5G52510.1 | Symbols: SCL8 | SCARECROW-like 8 | chr5:21307049-... 2643 0.0 > AT5G52510.1 | Symbols: SCL8 | SCARECROW-like 8 | chr5:21307049-21309302 FORWARD LENGTH=2254 Length=2254 Score = 2643 bits (1431), Expect = 0.0 Identities = 1896/2107 (90%), Gaps = 85/2107 (4%) Strand=Plus/Plus Query 1 tctctctctctatttctcagagtatctaat-t-tctctcttctctctTTCCATATTATCA 58 ||||||||| ||||||||||||||||||| | ||||||||||||| ||||||||||||| Sbjct 15 TCTCTCTCTAAATTTCTCAGAGTATCTAATCTCTCTCTCTTCTCTCGTTCCATATTATCA 74 Query 59 TGCGTTTC---A-T---T--A--TTTGGTAAt-t--t-ttttCTTTCTG-AGCTTTTGAG 102 |||||||| | | | | ||| | ||| | | | ||||||||| |||||||||| Sbjct 75 TGCGTTTCATAATTCAGTAAATTTTTTGAAATCTGATCTGTTCTTTCTGAAGCTTTTGAG 134 Query 103 AG---AATAAAAAATGGAATCTGGTTTCTCCGGCGGCGGTGGTGGGTCGGA-TTTT-C-A 156 || ||||||||||||||||||||||||||||||| |||||||||||||| |||| | Sbjct 135 AGAATAATAAAAAATGGAATCTGGTTTCTCCGGCGGTGGTGGTGGGTCGGATTTTTACGG 194 Query 157 CGGTGGTGGTGGTAGATCTATACCTGGAGGTCCCGGAACTGTAATCAACGTTGGTAATAA 216 ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| || Sbjct 195 CGGTGGTGGTGGTAGATCTATACCTGGAGGTCCAGGAACTGTTATCAACGTCGGTAACAA 254 Query 217 TAATCCTCA-ACCGACGTATAGAAACCAAATTCCTGGAATCTTCCTTGATCAGATCGGAA 275 ||||||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 255 TAATCCTCAGA-CGACGTATAGAAACCAGATTCCTGGAATCTTCTTTGATCAGATCGGAA 313 Query 276 ACAGAGTCTCCGCCGGTAATGGATTCGCCGGGAAACGTACTTTAGCAGATTTTCAAGCGG 335 |||||||| ||| ||||||||||||| |||||||| | |||||||||||||||||||||| Sbjct 314 ACAGAGTCGCCGGCGGTAATGGATTCTCCGGGAAAAGGACTTTAGCAGATTTTCAAGCGG 373 Query 336 CTCAGCAATATcaacagcaacagcaacagcaacagcaacaacaacaacCGTTTTATAATC 395 ||||| ||||| | | | | | | | | | |||||||||||||||||||||| || Sbjct 374 CTCAG------CAACATC-A-A-C-A-A-C-A-A-CAACAACAACAACCGTTTTATAGTC 418 Query 396 AAGCAGCTCTCAACGCTTTTCTTTTAAGGTCCGTGAAGCCTAGAAATTATCAGAATTTTC 455 |||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| Sbjct 419 AAGCAGCTCTCAACGCTTTTCTTTCAAGGTCTGTGAAGCCTCGAAATTATCAGAATTTTC 478 Query 456 AATCTCCGTCGCCGATGATCGATCTCACGTCGGTGAATGATATGAGTTTGTTTGGTGGTT 515 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 479 AATCTCCGTCGCCGATGATTGATCTCACGTCGGTGAATGATATGAGTTTGTTTGGTGGTT 538 Query 516 CTGGTTCGTCTCAGCGTTACGGTTCACCGGTTCTCAAGTCTCAGACGCAGCAGCATCAAT 575 ||||||| |||||||||||||||| |||||||| || |||||||||||| ||||| |||| Sbjct 539 CTGGTTCATCTCAGCGTTACGGTTTACCGGTTCCCAGGTCTCAGACGCAACAGCAACAAT 598 Query 576 CGAATTTCGGTTTATTTGGTGGGATCCGAATGGG-ATACGGGTCGAGTAATAATAA-CA- 632 || ||| ||||||||||||||||||||||||||| || ||||||| ||| |||||| | Sbjct 599 CGGATTACGGTTTATTTGGTGGGATCCGAATGGGAAT-CGGGTCGGGTATTAATAATTAT 657 Query 633 ACATGACGTTAACCGGCGTTCCTTGTATTGAACAGGTTCAGCATAACCGGGTTCATGAAT 692 || || |||||||||||||| |||||||||| |||||| | |||||||||||||||| Sbjct 658 CCA--ACATTAACCGGCGTTCCGTGTATTGAACCGGTTCA--A-AACCGGGTTCATGAAT 712 Query 693 CGGAGAACATGTTGAATAGTTTAAGAGAGCTAGAGAAACAGCTTTTAGATGATGACGATG 752 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 713 CGGAGAACATGTTGAATAGTTTAAGAGAGCTTGAGAAACAGCTTTTAGATGATGACGATG 772 Query 753 AGAGTGGTGGTGATGATGACGTGTCAGTTATCACAAATTCAAATTCCGATTGGATTCAAA 812 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 773 AGAGTGGTGGTGATGATGACGTGTCAGTTATAACAAATTCAAATTCCGATTGGATTCAAA 832 Query 813 ATCTCGTGACTCCGAACCCGAACCCGAACCCGGTTTTGTCTTTTTCACCGA-cttcttct 871 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 833 ATCTCGTGACTCCGAACCCGAACCCGAACCCGGTTTTGTCTTTTTCACCGAGC-TCTTCT 891 Query 872 tcttcgtcttcttc-ACTATCTACAGCTTCGACGACGACATCGGTATGTTC-ACGACAAA 929 |||||||||||||| || |||||||||||||||||||||||||||||||| | | |||| Sbjct 892 TCTTCGTCTTCTTCGCCT-TCTACAGCTTCGACGACGACATCGGTATGTTCTA-GGCAAA 949 Query 930 CGGTTATGGAAATCGCGACGGCGATCGCGGAAGGGAAAACGGAGATAGCGACGGAGATTT 989 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 950 CGGTTATGGAAATCGCGACGGCGATCGCGGAAGGGAAAACAGAGATAGCGACGGAGATTT 1009 Query 990 TGGCGCGTGTTTCTCAGTCGCCGAATCTTGAGAGGAGTTCAGAGGAGAAGCTGGTTGAGT 1049 |||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||| | Sbjct 1010 TGGCGCGTGTTTCTCAAACGCCTAATCTTGAGAGGAATTCAGAGGAGAAGCTTGTTGATT 1069 Query 1050 TCATGGTGACGGCGCTACGATCGCGGATTAATCAGGCTGAGAGTCTAGCTTCTCCGGCGA 1109 |||||||| | ||||| | | | || | ||| | |||||||||| | || Sbjct 1070 TCATGGTGGCTGCGCT----T--C-G----AT----C-GAG-G-ATAGCTTCTCCAGTGA 1111 Query 1110 CGGAATTGTATCGGAAGGAGCATTTAATCTCGACTCAATTGCTCAACGAGCTCTCTCCTT 1169 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1112 CGGAATTGTATGGGAAGGAGCATTTAATCTCGACTCAATTGCTCTACGAGCTCTCTCCTT 1171 Query 1170 GTTACAAACTCGGTTTC-ACGGCGGCGAATCTCGCCATTCTCAACGCCGCCGGTAACAAC 1228 ||| ||||||||||||| | ||| |||||||||||||||||| ||||||||| ||||||| Sbjct 1172 GTTTCAAACTCGGTTTCGA-GGCCGCGAATCTCGCCATTCTCGACGCCGCCGATAACAAC 1230 Query 1229 GACGCAGGGATGATGATGTTGCACGTTATCGATTTCGATATCGGAGAAGGTGGACAATAT 1288 |||| || |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1231 GACGGTGGAATGATGATACCGCACGTTATCGATTTCGATATCGGAGAAGGTGGACAATAC 1290 Query 1289 GTTAACCTTCTCCAAACACTCTCCACGCGCCGGAATGGTAAGAA-TCAGAATCAGAATTC 1347 ||||||||||||| ||| | |||||||||||||||||||| || ||||| ||||||||| Sbjct 1291 GTTAACCTTCTCCGTACATTATCCACGCGCCGGAATGGTAA-AAGTCAGAGTCAGAATTC 1349 Query 1348 TCCGGTGGTTAAGATCACAGCCGTGACGAACAACGTCTACGGATTTTTGGTCGATGGCGG 1407 |||||||||||||||||| |||||| |||||||||| ||||||| ||| ||||||| ||| Sbjct 1350 TCCGGTGGTTAAGATCACCGCCGTGGCGAACAACGTTTACGGATGTTTAGTCGATGACGG 1409 Query 1408 TGGAGAAGAGAGGTTGAAAGTCGTCGGAGATCTGTTGAGCCAACTCGGTAATCGACTCGG 1467 ||||||||||||||| |||| |||||||||| ||||||||||||||||| |||||||||| Sbjct 1410 TGGAGAAGAGAGGTTAAAAGCCGTCGGAGATTTGTTGAGCCAACTCGGTGATCGACTCGG 1469 Query 1468 TATCTCCGTGAGTTTCAACGTGGTGGCGAGTTTACGACTCGGTGATCTGAGTCGTGAATC 1527 ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 1470 TATCTCCGTAAGTTTCAACGTGGTGACGAGTTTACGACTCGGTGATCTGAATCGTGAATC 1529 Query 1528 GCTCGGGTGTGATCCCGACGAGCCGTTGGCCGTGAACTTAGCTTTCAAGCTTTATCGTGT 1587 ||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| Sbjct 1530 TCTCGGGTGTGATCCCGACGAGACTTTGGCTGTGAACTTAGCTTTCAAGCTTTATCGTGT 1589 Query 1588 TCCCGACGAAAGCGTATGCACAGAGAATCCGAGAGACGAGCTTCTCCGGCGCGTGAAGGG 1647 ||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| Sbjct 1590 TCCCGACGAAAGCGTATGCACGGAGAATCCAAGAGACGAACTTCTCCGGCGCGTGAAGGG 1649 Query 1648 ACTTAAGCCGCGCGTGGTGACTTTAGTGGAACAAGAAATGAATTCTAATACGGCACCGTT 1707 |||||| ||||||||||| ||| ||||||| |||||||||||||| |||||||| ||||| Sbjct 1650 ACTTAAACCGCGCGTGGTTACTCTAGTGGAGCAAGAAATGAATTCGAATACGGCGCCGTT 1709 Query 1708 TTTAGGGCGAGTGAGTGAGTCATGCGCGTGTTACGGTGCATTGCTTGACTCGGTCGAGTC 1767 ||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1710 TTTAGGGAGAGTGAGTGAGTCATGCGCGTGTTACGGTGCGTTGCTTGAGTCGGTCGAGTC 1769 Query 1768 GACCGTTCCTAGTTTGAATTCGGACCGCGTCAAGGTCGAGGAAGGAATTGGCCGGAAGCT 1827 || ||||||||| |||||| ||||| | ||| || ||||||||||||||||||||||| Sbjct 1770 TACGGTTCCTAGTACGAATTCCGACCGTGCCAAAGTTGAGGAAGGAATTGGCCGGAAGCT 1829 Query 1828 AATAAACGCGGTGGCGTGCGAAGGAATCGATCGGATTGAGCGGTGCGAGGTTTTCGGGAA 1887 | ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| Sbjct 1830 AGTAAACGCGGTGGCGTGCGAAGGAATCGATCGTATAGAGCGGTGCGAGGTGTTCGGGAA 1889 Query 1888 ATGGCGAATGCGGATGAGCATGGCTGGGTTCGAGTTAATGCCATTGAGTGAGAAGATAGC 1947 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1890 ATGGCGAATGCGGATGAGCATGGCTGGGTTTGAGTTAATGCCATTGAGTGAGAAGATAGC 1949 Query 1948 TGA-CCGACTCAATA-AC--GGAAACCTAGCT-CACCCGGGCTTTACCGTTAAAGAAGAT 2002 || ||| | || | | ||||||| || | ||||||||||||||||||||||||||| Sbjct 1950 GGAGTCGA-TGAAGAGTCGTGGAAACCGAG-TCCACCCGGGCTTTACCGTTAAAGAAGAT 2007 Query 2003 AACGGAGGTGTGTGCTTTGGTTGGATGGGACGGACACTCGCTGTCGCATCCGCTTGGCGT 2062 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 2008 AACGGAGGTGTGTGCTTTGGTTGGATGGGACGGGCACTCACTGTCGCATCCGCTTGGCGT 2067 Query 2063 TAATTTC 2069 ||| ||| Sbjct 2068 TAACTTC 2074 Score = 187 bits (101), Expect = 4e-46 Identities = 124/134 (93%), Gaps = 6/134 (4%) Strand=Plus/Plus Query 2062 TTAA-TTTCGAGGATTATTCTGATAATATTATCATTGTGATTTTCCATTTCGAAAAGTGT 2120 |||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2115 TTAATTTTCGA-GATTATTCTGATATTATTATCATTGTGATTTTCCATTTCGAAAAGTGT 2173 Query 2121 AGGAATCTTATGTAACAAAGaaaaaaaa----CTTTTATATTTTACTAATAATAAAAGAA 2176 |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| Sbjct 2174 AGGAATCTTATGTAACAAAGAAAAAAAAAAGACTTTTATGTTTTTCTAATAATAAAAGAA 2233 Query 2177 AGAATGATTGGGTT 2190 ||| |||||||||| Sbjct 2234 AGAGTGATTGGGTT 2247 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108633979380 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5