BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495328
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52570.1 | Symbols: BETA-OHASE 2, B2, CHY2, BCH2 | beta-caro... 1421 0.0
> AT5G52570.1 | Symbols: BETA-OHASE 2, B2, CHY2, BCH2 | beta-carotene
hydroxylase 2 | chr5:21334793-21337002 REVERSE LENGTH=1145
Length=1145
Score = 1421 bits (769), Expect = 0.0
Identities = 925/997 (93%), Gaps = 24/997 (2%)
Strand=Plus/Plus
Query 21 TAAAGTTTCATAAAACCTCAACGAGCTCCTTCCATGGCAGCAGGACTCTCAACAATCGCC 80
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 83 TAAAGTTTCATAAAACCTCAACGAACTCCTTCCATGGCAGCAGGACTATCAACAATCGCC 142
Query 81 GTAACACTCAAACCACTC-A-C-C-C-GC---CT----AAACCACCCTATCTCCGCCGCA 128
|||||||||||||||||| | | | | | || |||||||||||| ||| |||||
Sbjct 143 GTAACACTCAAACCACTCAACCGCTCTTCTTTCTCCGCAAACCACCCTATATCCACCGCA 202
Query 129 GTTTTCCCTCCATCTCTCAGATTCAACGGCTTAAGACGTCGAAAGATCCTCACCATTTGT 188
||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||||
Sbjct 203 GTTTTCCCTCCATCTCTAAGATTCAACGGCTTCCGACGTCGAAAGATTCTCACCGTTTGT 262
Query 189 TTTGTCGTTGAAGAACGGAAACAGAGCTCTCCCATGGAC---G---ACAAACCGGAAAGC 242
|| ||||| |||||||||||||| ||||||||||||||| | ||||||| ||||||
Sbjct 263 TTCGTCGTGGAAGAACGGAAACAAAGCTCTCCCATGGACGATGACAACAAACCAGAAAGC 322
Query 243 ACGACGAGCTCTTCTGAGATCTTGATGACGTCGCGGCTTCTCAAGAAAGCAGAGAAGAAG 302
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 323 ACGACAAGCTCTTCTGAGATCTTGATGACGTCGCGGCTTCTCAAGAAAGCGGAGAAGAAG 382
Query 303 AAATCAGAGAGATTCACTTATCTAATCGCAGCTGTGATGTCAAGCTTTGGTGTCACTTCT 362
||||||||||| ||||||||| |||| |||||||||||||| ||||||||| ||||||||
Sbjct 383 AAATCAGAGAGGTTCACTTATTTAATAGCAGCTGTGATGTCGAGCTTTGGTATCACTTCT 442
Query 363 ATGGCTATCATGGCTGTTTATTATCGATTTTCTTGGCAAATGAAGGGAGGTGAAGTGCCT 422
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 443 ATGGCTATAATGGCTGTTTATTACCGATTTTCTTGGCAAATGAAGGGAGGTGAAGTGTCT 502
Query 423 TTATCAGAGATGTTTGGTACATTTGCTCTCTCAGTTGGTGCTGCCGTTGGGATGGAGTTT 482
| | |||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 503 GTGTTAGAGATGTTTGGTACATTTGCTCTTTCCGTTGGTGCTGCCGTTGGGATGGAGTTT 562
Query 483 TGGGCAAGATGGGCTCATAGAGCTCTTTGGCACGATTCTTTATGGAACATGCATGAGTCT 542
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 563 TGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGATTCTTTATGGAACATGCATGAGTCA 622
Query 543 CATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGTGTTCGCTATAATAAACGCG 602
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 623 CATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGTGTTTGCTATAACAAACGCG 682
Query 603 GTTCCTGCGATTGGTCTACTCTATTATGGATTCTTTAATAAAGGACTTGTTCCTGGTCTC 662
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 683 GTTCCTGCGATTGGTCTACTCTATTATGGATTCTTGAATAAAGGACTTGTTCCTGGTCTC 742
Query 663 TGCTTCGGTGCCGGACTGGGAATAACGGTGTTTGGAATGGCTTACATGTTTGTCCACGAT 722
||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||
Sbjct 743 TGCTTCGGTGCCGGACTGGGAATAACGATGTTTGGAATGGCTTACATGTTCGTTCACGAT 802
Query 723 GGACTCGTGCACAAGAGATTCCCTGTCGGTCCCATTGCCAACGTTCCTTACCTCCGAAAG 782
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 803 GGACTTGTGCACAAGAGATTCCCTGTAGGTCCCATTGCCAACGTTCCTTACCTTCGAAAG 862
Query 783 GTCGCGGCCGCTCACCAGCTACACCACACAGACAAATTCAAGGGTGTACCATATGGGCTG 842
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 863 GTCGCCGCCGCTCACCAGCTACACCACACAGACAAATTCAAAGGTGTACCATATGGGCTG 922
Query 843 TTTCTTGGACCCAAGGAAGTGGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATA 902
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 923 TTTCTTGGACCAAAGGAAGTAGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATA 982
Query 903 AGCCGGAGAATCAAATTATACAACAAGGGTTCTTCTACCTCCTAATTGCTATATAACCCC 962
||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 983 AGCCGGAGAATCAAATTATACAACAAGGGTTCTTCTACCTCTTAATTGCTACA-AACCC- 1040
Query 963 AATTTTACTTCTTTTATATATGTTTTTGTAATATATT 999
|||||||||||||| || |||||||||||| |||
Sbjct 1041 AATTTTACTTCTTTGAT----GTTTTTGTAATACATT 1073
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1000 AAAAATGACGTAGAAGAAAGAGTCAGGCTAA 1030
|||||||||||||||||||||||||||||||
Sbjct 1104 AAAAATGACGTAGAAGAAAGAGTCAGGCTAA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50485317735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5