BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495355
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52900.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1879 0.0
> AT5G52900.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21452442-21453808
REVERSE LENGTH=1275
Length=1275
Score = 1879 bits (1017), Expect = 0.0
Identities = 1206/1291 (93%), Gaps = 38/1291 (3%)
Strand=Plus/Plus
Query 1 CTGAAACATATGTTCCCAATTC-AAACATTGTTTTGTCTCAAACAAATTTCTCTGCACAC 59
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1 CTGAAACATATGTTCCCAATTCAAAAAATTGTTTTGTCTCAAACAAATTTCTCTGCACAC 60
Query 60 ACTCAACAACATATCCcaaaacaaaaccaaaagcca--aaagaaaaaaga-aaTCAGCCA 116
|||||||||||||||||| ||||||| |||||| | ||| |||||||| || ||||||
Sbjct 61 ACTCAACAACATATCCCATAACAAAA--AAAAGCTATTAAA-AAAAAAGAGAAGCAGCCA 117
Query 117 TGGAAGAAGATAAACAAGAAGCTTCAATGCCACTAGTTCCCATAGACAGCTTCTCTTATA 176
||||||||| ||| |||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 118 TGGAAGAAGGTAAGCAAGAAGCTTCAATGCCACTAGTTCCAATTGACAGCTTCTCTTACA 177
Query 177 GTTGGTTAGTTAACTTTCCTTCTTTAGAAGCTTCCAGTGATGATCATCATCAAACCTACG 236
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 178 GTTGGTTAGTTAACTTTCCTTCTTTAGAAGCTACCATTGATGATCATCATCAAACATACG 237
Query 237 AAGATTCATCTTCTTCTTCTTCCTTCATTGAGATGGATCCAAGATTGCCTCCTTCTAGAA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAGATTCATCTTCTTCTTCTTCCTTCATTGAGATGGATCCAAGATTGCCTCCTTCTAGAA 297
Query 297 GATTCTTCATCAAAACATCCCATGAAACTAGCTTCAAGTTCGATAACTTCGTTTCTTTCT 356
||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||
Sbjct 298 GATTCTTCATCAAAACATCTCATGAAAGTAGCTTCAAGTTCGATAACTTCGTCTCTTTCT 357
Query 357 CCGACGAAGATCACTCTTTAGTTCACGCCGACGAGCTCTTCCGTGATGGCTACGTCATGC 416
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 358 CCGACGAAGATCACTCTTTAGTTCACGCCGACGAGCTCTTCCGTGACGGCTACGTTATGC 417
Query 417 CATACCGATTAAAAG-CCACGTCAGCGGCTACCGAGGAAGAATCTGAGCCGTTGGACACA 475
| || ||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 418 CTTATCGATT-AAAGCCCACGTCCGCGGCTACCGAGGAAGAATCTGAGCCGTTGGATACA 476
Query 476 ACAACAACGACGGGTAAGATTG----A--TGGAGTTAAGAGCAAGTCTTCTCCTACTTCT 529
|||||| || | | ||||||| | ||| |||| |||||| ||||||||||||||
Sbjct 477 ACAACATCG--GAG-AAGATTGATACACGTGGCCTTAACAGCAAGCCTTCTCCTACTTCT 533
Query 530 TCAAGAAAGCTAAGGAGAGTGTCCAAATGGGTTTTGTTGAAGTATCTTGATTTCTTGACG 589
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 534 TCAAGAAAGCTGAGGAGAGTGTCCAAATGGGTTTTGCTGAAGTATCTTGATTTCTTGACG 593
Query 590 CCATTGTGTAAGAGGTTAAGGAGATGTAGATCCGCTGGAACAACGAGAAGTATCGGTATG 649
|||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 594 CCATTGTGTAAGAGATTAAGGAGATGTAGATCCGCTGTAACAACGGGAAGTATCGGTATG 653
Query 650 GATTCGAGGATCCGTGTAACGACGTCGTGTAGGAGCAGAGTTTATTCTGATGAAATTACT 709
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 654 GATTCGAGGATCCGTGTAACGACTTCGTGTAGGAGCAGAGTTTATTCTGATGAAATGACG 713
Query 710 TCGTCGCCAAGAATAAGTGTTGCTGATGATTATTATTGGAGAAGGTCTTGTGACTCCGAG 769
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 714 TCGTCGCCAAGAATAAGTGTTGCTGATGATTATTATTGGAGAAGGTCTTGTGACTCTGAG 773
Query 770 AGCTCTATTTACGAAGCCGTTCTTCATTGCAAGCAATCATTCGGTACGTTAT-AGAACAA 828
|||||||| |||||||||||||||||||||||| |||||||| | | | || |||| ||
Sbjct 774 AGCTCTATATACGAAGCCGTTCTTCATTGCAAGAAATCATTC-G-A-GAAATAAGAAGAA 830
Query 829 -AATCCATGGAAGAGGAGCAGTTAGAGAAGTAGAGATGGAGAATATTTAAGCTTGAGAGA 887
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 831 TAATCCATGGAAGAGGAGCAGTT--AGAAGTAGAGATGGAGAATA-TTAAGCTTGAGAGA 887
Query 888 ATAAGCAAATTGCATTAACACGTTACACATGGAGTGGgagag--agagagagagCAACTT 945
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 888 ATAAGCAAATTGCATTAACACGTTACACATGGAGTGGGAGAGAAAGAGAGGGAGCAACTT 947
Query 946 GTGATGTGTCTTTTTGTTGTTTCTCTCTCTTGAATTAAAGAGATTGATGTGAATGATCCA 1005
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GTGATGTGTCTTTTTGTTGATTCTCTCTCTTGAATTAAAGAGATTGATGTGAATGATCCA 1007
Query 1006 TGTGAATGTGTCATCTGATGTGGATCAAGAATGtttttgtttttttACATGAGTGGGCAC 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TGTGAATGTGTCATCTGATGTGGATCAAGAATGTTTTTGTTTTTTTACATGAGTGGGCAC 1067
Query 1066 ATTTATAGAAATATATATGGGGCTGCAAGCAGAACCAAGAAAATATTTTCAGATTTTCTT 1125
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1068 ATTTATAGAAATATATATGGGGCTGCAAGCAGAATCAAGAAAATATTTTCAGATTTTCTT 1127
Query 1126 GGCTATTTTTT---CTCCATAT----ATATTCGGATCATGTAAGTTAAATAGTTTCTTTT 1178
||||||||||| |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1128 GGCTATTTTTTTTTCTCCATATGTGTATATTCCAATCATGTAAGTTAAATAGTTTCTTTT 1187
Query 1179 TATATATGGGGTAAAAACTATAAGTGCCTACCCATGTTTACTTTTAAATATTTCTGGTCC 1238
||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 1188 TATATATGGGGTAAAAACTATAAGTGCCTACCCATGTTTACTTTTAA-T-TT-CTGGTCC 1244
Query 1239 AATTGTGTTTGAATATTCTTTCTTTTTGTGC 1269
|||||||||||||||||||| ||||||||||
Sbjct 1245 AATTGTGTTTGAATATTCTTACTTTTTGTGC 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62399277435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5