BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495363 Length=740 Score E Sequences producing significant alignments: (Bits) Value AT5G52980.1 | Symbols: | CONTAINS InterPro DOMAIN/s: ATPase, v... 1075 0.0 > AT5G52980.1 | Symbols: | CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21482160-21483722 REVERSE LENGTH=918 Length=918 Score = 1075 bits (582), Expect = 0.0 Identities = 651/685 (95%), Gaps = 2/685 (0%) Strand=Plus/Plus Query 1 AAAACATCGCGGAAAACCGACCCGCCTGATCAACGTCAAGTGTTAGGACCCGATCAAATA 60 ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| | Sbjct 22 AAAACATCGCGGAGAACCGACCCGCCTGAACAACGTCAAGTGTTTGGACCCGATCAAAGA 81 Query 61 TGGATCAACCCGACCCGAAAAATGGCGCTGGTCTGATTCTCTCCGCCACTGAACCGATAC 120 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 82 TGGATCAACCCGACCCGAAAAATGGCTCTGGTCTGATTCTCTCCGCCACTGAACCGCTGC 141 Query 121 GGTCGTTTCTCGCCCTCGCCTCCGGTGATCATCGTCTCTCCGAAGAACTCAGAGAAATTG 180 | ||||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||| Sbjct 142 GATCGTTTCTCGCTCTCGCCTCCGGTGATCGTCGTCTCTCCGACGAGCTCAGAGGAATTG 201 Query 181 CTACCGATCTTCGCTCGAAGAACACCGTTCCGTACAAATTGCTTCGCGCTCTATGGACCG 240 || ||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| Sbjct 202 CTTCCGATCTTCGCTCGAAGAACACCATTCCGTACAAATTGCTCCGCGCTATATGGACCG 261 Query 241 GATCCGATCCATCGACCAGACCGGATTTGTTGGGACTTTTCTCCGGCTCCGATTTCGTCT 300 |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 262 GATCCGATCCGTCGACCAGACCGGATTTGTTGGGACTTTTCTCCGGCTCCAATTTCGTCT 321 Query 301 TCACCAGTCCCAAACCCAGAGAAAAGAGCGAAGAACTGAAATTGAGATT-GCTAAATCTC 359 ||||||||||||||||||||||||||||||||||||||||| ||||||| | | || ||| Sbjct 322 TCACCAGTCCCAAACCCAGAGAAAAGAGCGAAGAACTGAAACTGAGATTAG-TGAAGCTC 380 Query 360 AGAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGTTAAAGATATAACACCCAAGAAA 419 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 381 AGAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGTTAAAGATATAACACCAAAGAAA 440 Query 420 CAAGTCGAGGAGCCTTTCTCGTCTTACAAAGACCAGCTCGGTTTCGGTTTACATGTTGGT 479 |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 441 CAAGTCGAAGAGCCTTTCTCTTCTTACAAAGACCAGCTCGGTTTTGGTTTACATGTTGGT 500 Query 480 CTTACCATGTTCACTGGATATTTGGTTGGATACGCTTCTTTTAGAGCTTTATTTAACCGC 539 |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct 501 CTTACCATGTTCACTGGATATTTGGTTGGATACGCTTCCTTCAGAGCTTTATTCAACCGC 560 Query 540 AACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACTAGTTTTGGCGATGCTTGTGGAA 599 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 561 AACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACTAGTTCTGGCGATGCTTGTGGAA 620 Query 600 ACGCTTCTGTTTATAATCAAAACTTCTAAAGATGATCAGATTCAGAGCTCTAAATCGTTC 659 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 621 ACGCTTCTATTTATAATCAAAACGTCTAAAGATGATCAGATTCAGAGCTCTAAATCGTTC 680 Query 660 ACTCAGAGCTCTCCATCGTTCACTC 684 ||||||||||||||||||||||||| Sbjct 681 ACTCAGAGCTCTCCATCGTTCACTC 705 Score = 141 bits (76), Expect = 9e-33 Identities = 85/89 (96%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 653 ATCGTTCACTCAGAGCTCTCCATCGTTCACTCCCACTACTAAGAAGAATCAATAGAA-TT 711 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 695 ATCGTTCACTCAGAGCTCTCCATCGTTCACTCCCACTACTAAGAAAAATCAATAGAACTT 754 Query 712 TGGTTTGCATTCTCTTCCTACTGAGAAAA 740 || |||||||||| ||||||||||||||| Sbjct 755 TG-TTTGCATTCTTTTCCTACTGAGAAAA 782 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35917415105 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5