BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495366 Length=2245 Score E Sequences producing significant alignments: (Bits) Value AT5G53020.1 | Symbols: | Ribonuclease P protein subunit P38-re... 3441 0.0 > AT5G53020.1 | Symbols: | Ribonuclease P protein subunit P38-related | chr5:21499899-21502401 FORWARD LENGTH=2329 Length=2329 Score = 3441 bits (1863), Expect = 0.0 Identities = 2100/2214 (95%), Gaps = 17/2214 (1%) Strand=Plus/Plus Query 1 ATGTCCATGGGTGATGAGAAACAGTGTGAGATGAGGAACGAAATGATGTTATTTGGTTTG 60 |||||||| | ||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 1 ATGTCCATAAGAGATGAGAAACAGTGTGAGATGAGAAACGAAATGATGCTATTTGGTTTA 60 Query 61 CTGATTAGGAGAGTCTTTGATGAGGAAAAAGGTAAGCTTCTTCAGAGGCTTGAGGATGCC 120 |||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 61 CTGATTAGGAGAATCTTTGATGAGGAGAGTGGTAAGCTTCTTCAGAGGCTTGAGGATGCC 120 Query 121 AATAGTGAAATTACAGAGTTGAAGAAAGTGAGAAATGATGATGCAAAAGCTAACGAGAAG 180 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AATTGTGAAATTACAGAGTTGAAGAAAGTGAGAAATGATGATGCAAAAGCTAACGAGAAG 180 Query 181 GTGGTTAGCATAATCGCGTCTCAAAAACAGAATTGGTTAAGGGAGAGGTATGGATTAAGG 240 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 181 GTAGTTAGCATAATCGCGTCTCAGAAACAGAATTGGTTAAGGGAGAGGTATGGATTAAGG 240 Query 241 CTACAGATTGAGGCTCTGATGAAGGAACTAAGGAATATTgagaagaggaagagaaaaagc 300 || |||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||| Sbjct 241 CTGCAGATTGAAGCTCTGATGAAGGAACTAAGGAATATAGAGAAGAGGAAGAGACATAGC 300 Query 301 ttatc-ggaga-tgcaagaaagattaaaagaaaaggaagGTTTAGTGGAATCTAAAGATA 358 ||| | ||| | |||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 301 TTA-CTGGA-ATTGCAAGAAAGATTAAAGGAAAAGGAAGGTTTATTGGAATCTAAAGATA 358 Query 359 AGGCAATAGAAGACGAGAAGCGGAAATGCGAAGAGTTGGAGGAAAGGCTGGTCAAAGCAG 418 ||||||||||||| |||||||| ||||||||| ||| ||||||||||| || ||||||| Sbjct 359 AGGCAATAGAAGAAGAGAAGCGTAAATGCGAATTGTTAGAGGAAAGGCTAGTGAAAGCAG 418 Query 419 AAAAAGAAGTTCAAGATTTAAGGGAAACACAAGAGAGAGATGTGCAAGAACATTCTTCTG 478 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 AAAAGGAAGTTCAAGATTTAAGGGAAACACAAGAGAGAGATGTGCAAGAACATTCTTCTG 478 Query 479 AGCTATGGAGGCAAAAGAAGACATTCCTTGAGCTTGCTTCTAGCCAGAGACAACTTGAAG 538 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 AGCTGTGGAGGCAAAAGAAGACATTCCTTGAGCTTGCTTCTAGCCAGAGACAACTTGAAG 538 Query 539 CTGAACTGAGTCGTGCAAATAAGCAAATTGAGGCCAAAGGACATGAACTTGAAGACTTGT 598 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 539 CTGAACTGAGTCGTGCAAATAAGCAAATTGAGGCTAAAGGACATGAACTTGAAGACTTGT 598 Query 599 CATTAGAAATCAATAAGATGCGGAAAGATTTGGAACAGAAAGATCGAATCTTGGCTGTGA 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CATTAGAAATCAATAAGATGCGGAAAGATTTGGAACAGAAAGATCGAATCTTGGCTGTGA 658 Query 659 TGATGAAAAAGTCAAAACTGGACATGACCGAGAAGCAGATGGCATTGCTTAAGGAGGCTa 718 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| | Sbjct 659 TGATGAAAAAGTCAAAACTGGACATGACGGAGAAGCAGATGACATTGCTTAAGGAGGCAA 718 Query 719 agaaaaagcaagatgaagaagaagcaaagaaatggacaacgaatccaaaatcaagaaaaC 778 |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 719 AGAAAAAGCAAGATGAAGAAGAAGCAAAGAAATGGAAAATGAATCCAAAGTCAAGAAAAC 778 Query 779 ACGAAAGACGGTCACTAAGAAGCATGTTTGCTTTTGAAGCCACAAGTAAGCCTAAAAGCA 838 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 779 ACGAGAGACGGTCACTAAGAAGCATGTTTGCTTTTGAAGCCACAAGTAAGCCTAAAACCA 838 Query 839 ACAGTGTTGGTTCCATTACTCACATTGAACATCTGGAGTCGAATAAAGATCCTGATGTCG 898 ||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 839 ACAGTGTAGGTTCCATTACTCACATTGAACATCTGGATTGGAATAAAGATCCTGATGTCG 898 Query 899 TCCCCTACTCTATTGGTGATCTCAGTGACCTAGGAGTCGATGGAATTGCAAAGAAGCGTG 958 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 899 TCCCCTACTCTATTGGTGATCTCAGTGAACTAGGAGTCGATGGAAATGCAAAGAAGCGTG 958 Query 959 AGAATTTGATTTTTGGAGAGGAAGAACTTTGTATTAGAGTGATAGGGAAGAAGCAAGAGA 1018 |||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 959 AGAATTTGGTTTTTGGGGAGGAAGAACTTTGTATTAGAGTGATAGGGAACAAGCAAGAGA 1018 Query 1019 TAGAGCTAGGGGACTTTACAGAGCATATGAAACTAAAAGATGAGAAGGTTGAAACTCTGT 1078 ||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 1019 TAGAGATAGGGGATTTTACTGAGCATATGAAACTAAAAGATGAAAAGGTTGAAACTCTGT 1078 Query 1079 GTTTGCATCTGATGAACTCTGAGTTAGAATCAAAGCGGTTGAGATCTTGTATCGAAGGAC 1138 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1079 GTTTGCATCTGATGAACTCTGAGTTAGAATCAAAGCGGTTGCGATCTTGTATTGAAGGAC 1138 Query 1139 TGAGCCAAGAAATGTCACAGTTGAGACACGACAACACACAGTTGGAAGGCATGGTAAACC 1198 ||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| | Sbjct 1139 TGAGCCAAGAAATGTTACAGTTGAGACATGACAACACACAGTTAGAAGGCATGGTAAATC 1198 Query 1199 GAAGAGGGGAAGAATCGGTTTCCCTGAAGAACCAAGATTTCAAGACTCAGCCAAAAAGCC 1258 |||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1199 GAAGAGGGGAGGAGTCGGTTTCCCTGAAGAATCAAGATTTCAAGACTCAGCCAAAAAGCT 1258 Query 1259 TGGTGCCCCAGAAGAACAATATGAGTTGTAGAAGGAAGAACACAAAAACAGAAGCACTAG 1318 |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 1259 TGGTTCCCCACAAGAACAATATGAGTTGTAGAAGAAAGAACACAAAAACAGAAGCACGAG 1318 Query 1319 GAGAGCAAGAAAGAGAATACGAATCAAGGGAAGTTTCTCAGGAAAATGCCACCGAGAAAG 1378 |||||||||||||||||| || |||||||| |||||||||| |||||| |||||||||| Sbjct 1319 GAGAGCAAGAAAGAGAATTTGATTCAAGGGATGTTTCTCAGGTAAATGCTACCGAGAAAG 1378 Query 1379 GAAGGGAATCATACTCGCCTGATGAATTGAGACATTTGACTTTGAAGGCTGCTCAATCTG 1438 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1379 GAAGGGAATCATACTCTCCTGATGAATTGAGACATTTGACTTTGAAAGCTGCTCAATCTG 1438 Query 1439 ATGCTGAAGAAGGATCTGAAAACGAAAGACACGTACCAGAGAATAAGTGTACCA---GAG 1495 |||||||||||||||||||||||||||||| | ||||||||||| ||||||||| ||| Sbjct 1439 ATGCTGAAGAAGGATCTGAAAACGAAAGACTCTTACCAGAGAATGAGTGTACCAAAAGAG 1498 Query 1496 AAAAAGCAAATGGTAAGGAGAATAAGAAACTTATAAAGTCATCCAGCACAAGCAATCCAC 1555 ||||||| ||| ||||||||| ||||| || ||| ||| |||||||||||||||| Sbjct 1499 AAAAAGCGAATAGTAAGGAGAGTAAGAGCCTAATA---TCA---AGCACAAGCAATCCAC 1552 Query 1556 CTTGGAGAATGGATCTTCATGCTCTTGGAGTTTCATACAAGATCAAAAGGCTGAAACAAC 1615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1553 CTTGGAGAATGGATCTTCATGCTCTTGGAGTTTCATACAAGATCAAAAGGCTGAAACAAC 1612 Query 1616 AACTGATGATGCTTGAAAGATATATTGGGAAACCGGAGAGCCAAGAGACTGaaaaaaaCA 1675 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1613 AACTGATGATGCTTGAAAGATATATTGGTAAACCGGAGAGCCAAGAGACTGAAAAAAACA 1672 Query 1676 TCAGTGATACCGGGAAAAGGGCTTTGTTATTGCTAATTACATTGCTCAACAAACAAGTTA 1735 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1673 GCAGTGATACCGGAAAAAGGGCTTTGTTATTGCTCATTACATTGCTCAACAAACAAGTTA 1732 Query 1736 CTAGGTATCAATCACTACACGAGAAGATTGATGATTTGTGCAAAAGAATGCATGTGAATG 1795 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1733 CTAGGTATCAATCACTACAAGAGAAGATTGATGATTTGTGCAAAAGAATGCATGTGAATG 1792 Query 1796 ATCCAG-AGAAGATTAGCGGAAAAATCAGAGTATATGGGGAAGCCAAAACATCACTAGAG 1854 |||| | |||||||||||||||||| ||||| | |||||||||||||||||||||||||| Sbjct 1793 ATCC-GCAGAAGATTAGCGGAAAAAACAGAGCAAATGGGGAAGCCAAAACATCACTAGAG 1851 Query 1855 CATTTCTTAGATGAGACATTTCAGCTGCAAAGATACATAGTGGCAACAGGACAAAAACTG 1914 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1852 CATTTCTTAGATGAGACATTTCAGCTGCAAAGATACATAGTGGCAACAGGACAAAAACTG 1911 Query 1915 ATGGAAATCCAATCCAAGATAGCTTCTGGCTTTGTTGAGTTTCTAGTAGACCTAATCACA 1974 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1912 ATGGAAATCCAATCCAAGATCGCTTCTGGCTTTGTTGAGTTTCTAGTAGACCTAATCACA 1971 Query 1975 ACTGAAACCTCCTCTTCTAGTAGCAGCTTTGATCCAGAACGTTTTGCAGAAAACATCAAA 2034 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1972 ACTGAATCCTCCTCTTCTAGTAGCAGCTTTGATCCAGAACGTTTTGCAGAAAACATCAAA 2031 Query 2035 AGTCTGTTTCAAGAAGTGCAAAGAGGGCTTGAGGTTAGGATATCCCGAAGCATAGGTGAT 2094 ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 2032 AGTCTGTTTCAGGAAGTGCAAAGAGGTCTTGAGGTTAGGATATCCCGATGCATAGGTGAT 2091 Query 2095 CTTGAAGGGACATTAGCTCGTGAGGGAATGATACATTTGAAACGACGGGGCGACATGGAG 2154 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2092 CTTGAAGGGACATTAGCTCGTGAGGGAATGATACATTTGAAACGACGGGCCGACATGGAG 2151 Query 2155 CTACGAGTATGAGAAGCTACAAAATATGTAAATTCTTTACAATTCCTCTTCAGC 2208 ||||||||||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct 2152 CTACGAGTATGAGAAGCTACAAAATGTGTAAATTATTTAC--TTCCTCTTCAGC 2203 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 111395009355 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5