BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495371 Length=1568 Score E Sequences producing significant alignments: (Bits) Value AT5G53050.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1943 0.0 AT5G53048.1 | Symbols: | other RNA | chr5:21509861-21511850 FO... 254 2e-66 > AT5G53050.2 | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:21510129-21513576 REVERSE LENGTH=1661 Length=1661 Score = 1943 bits (1052), Expect = 0.0 Identities = 1168/1226 (95%), Gaps = 0/1226 (0%) Strand=Plus/Plus Query 1 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGACGTCGGCCCAGAGACGACTCTTAACAATG 60 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 143 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGATGTCGGCCCAGAGACGACGCTTAACAATG 202 Query 61 CCGCAATCAAAATCTTCTACAGAACCTACGGTCATGGTCCTATCAAAGCTCTTCTCATCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 203 CCGCAATCAAAATCTTCTACAGAACGTACGGTCATGGTCCTATCAAAGCTCTTCTCATCA 262 Query 121 TAGGTTTAGCAGGAACCCATGAGTCCTGGGGTCCTCAAATCATGGGATTGACGGGGACGG 180 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 263 TAGGTTTAGCCGGAACCCATGAGTCATGGGGTCCTCAAATCATGGGATTGACGGGAACGG 322 Query 181 ATAAACCCAACGACGACGATGAAGACGACGGAGGAATTGTTTCCGATGGTTCTGGTATCG 240 |||||||||||||||| ||||| ||||||||||||||||||||||||| ||| || |||| Sbjct 323 ATAAACCCAACGACGATGATGACGACGACGGAGGAATTGTTTCCGATGATTCCGGCATCG 382 Query 241 AGGTTTGCGCTTTCGATAATCGTGGGATGGGTCGGAGCTCTGTGCCTACCCACAAATCCG 300 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | Sbjct 383 AGGTTTGCGCTTTCGATAATCGTGGTATGGGTCGAAGCTCTGTGCCTACCCACAAATCTG 442 Query 301 AGTACACAACAACGATAATGGCAAATGATTCAATTAGTTTGTTGGATCATTTGGGTTGGA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 443 AGTACACAACAACGATAATGGCAAATGATTCAATTAGTTTGTTGGATCATTTGGGTTGGA 502 Query 361 AGAGAGCTCACATAATTGGCCATTCTATGGGAGCTATGATAGCTTGCAAGTTAGCTGCAA 420 ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 503 AGAAAGCTCACATAATTGGTCATTCTATGGGAGCAATGATAGCTTGCAAGTTAGCTGCAA 562 Query 421 TGGTGCCCGAACGGGTTCTTTCGTTGGCGTTGCTTAACGTTACAGGTGGAGGGTTCGAAT 480 ||| ||| |||||||||||||| |||||||||||||| |||||||||||||| || |||| Sbjct 563 TGGCGCCTGAACGGGTTCTTTCTTTGGCGTTGCTTAATGTTACAGGTGGAGGTTTTGAAT 622 Query 481 GTTTCCCCAAGCTTGACCGGCAATCGCTTTCCATTGCGATACGTTTTCTGAAGGCAAAGA 540 | ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 623 GCTTCCCTAAGCTTGACCGGAAATCGCTTTCCATTGCGATACGTTTTCTGAAAGCAAAGA 682 Query 541 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACTTAGAAG 600 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 683 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACCTAGAAG 742 Query 601 AATCTGTAGGAACTAACACAAGACGGGCAATTTTATATCAGCAATATGTGAAAGGAATAT 660 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 743 AATCTGTAGGAACTAATACAAGACGGGCAATTTTATATCAGCAATATGTAAAAGGAATAT 802 Query 661 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACGCTTGTTGGTTAC 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 803 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACGCTTGTTGGTTAC 862 Query 721 ACAAAATCACAAAACCAGAGATCGAAGTAATCCGCTCGGCTGGATTTCTTGTCTCAGTCA 780 |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 863 ACAAAATCACAAAAGTAGAGATTGAACTAATCCGCTCGGCTGGATTTCTTGTCTCAGTCA 922 Query 781 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 923 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 982 Query 841 TATATCCCGTCGCTAGAATGGTAGATCTTCATGGAGGTCATCTTGTAAGCCATGAGAGGA 900 ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| | Sbjct 983 TATATCCAGTCGCTAGAATGGTGGATCTTCATGGAGGTCATCTTGTAAGCCACGAGAGAA 1042 Query 901 CAGAAGAGGTTAATAAAGCTCTTCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAAGAC 960 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1043 CAGAAGAGGTTAATAAAGCTCTGCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAATAT 1102 Query 961 CAACTGATTGGACTAACCTCACCATGGAAACACCCGGTTATCTCAAGAGGAGACTAGCAT 1020 |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| Sbjct 1103 CAACTGATTGGACTAACCTCACCATGGAAACACCTGGTTATTTCAAGAGGAGACTAACAT 1162 Query 1021 TGATTACAAGCTCATCAGAAGGCAAGAATGCCGTCTCTCCCGCACATTTTATAGCGGAAA 1080 |||||| ||||||| | ||||||||||||| || |||||| |||||||| |||||||||| Sbjct 1163 TGATTAGAAGCTCAACGGAAGGCAAGAATGTCGCCTCTCCTGCACATTTCATAGCGGAAA 1222 Query 1081 AGTTCCATCGCTTTCTACTTTTCCTCTTCGGACTTCTGGTTTTGGCATTTGAGTATTCAA 1140 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1223 AGTTCCATGGCTTTCTACTTTTCCTCTTCGGGCTTCTGGTTTTGGCATTTGAGTATTCAA 1282 Query 1141 GAAGAGCATTCAGGGCTGTAAAACCCGTCAAAGTTGGACCTTGTCTCACATAACAACAAC 1200 ||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||| Sbjct 1283 GAAGAGCTTTCAGGGCTGTAAACCCCGTCAAAGTTGGACCTTCTCTAACATAACAACAAC 1342 Query 1201 CCTTCACATTTCAATTTGTCGACCAA 1226 ||||||||| |||||||||||||||| Sbjct 1343 CCTTCACATATCAATTTGTCGACCAA 1368 Score = 141 bits (76), Expect = 2e-32 Identities = 91/98 (93%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 1447 TCCATGACAAACATTTGTTCTACGAATGTAATATGTAAAGATAAGACATCGAAATCTCAA 1506 |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1544 TCCATGTCAAACATTTGTTCTACGAACATAATATGTAAAGATAAGACATCGAAATCTCAA 1603 Query 1507 -TATAGACTTGTATGTTTTCGTGTACCTATAGAACATA 1543 |||||||| ||||||||| |||||||||| ||||||| Sbjct 1604 ATATAGACTCGTATGTTTTTGTGTACCTATGGAACATA 1641 > AT5G53048.1 | Symbols: | other RNA | chr5:21509861-21511850 FORWARD LENGTH=936 Length=936 Score = 254 bits (137), Expect = 2e-66 Identities = 150/156 (96%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 635 ATATCAGCAATATGTGAAAGGAATATCAGAAACTGGAATGCAGTCCAAGTACGGGTTTGA 694 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 910 ATA-CAGCAATATGTAAAAGGAATATCAGAAACTGGAATGCAGTCCAAGTACGGGTTTGA 852 Query 695 TGGCCAAATTAACGCTTGTTGGTTACACAAAATCACAAAACCAGAGATCGAAGTAATCCG 754 |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| Sbjct 851 TGGCCAAATTAACGCTTGTTGGTTACACAAAATCACAAAAGTAGAGATTGAACTAATCCG 792 Query 755 CTCGGCTGGATTTCTTGTCTCAGTCATTCATGGAAG 790 |||||||||||||||||||||||||||||||||||| Sbjct 791 CTCGGCTGGATTTCTTGTCTCAGTCATTCATGGAAG 756 Score = 241 bits (130), Expect = 2e-62 Identities = 152/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 1019 ATTGATTACAAGCTCATCAGAAGGCAAGAATGCCGTCTCTCCCGCACATTTTATAGCGGA 1078 |||||||| ||||||| | ||||||||||||| || |||||| |||||||| |||||||| Sbjct 223 ATTGATTAGAAGCTCAACGGAAGGCAAGAATGTCGCCTCTCCTGCACATTTCATAGCGGA 164 Query 1079 AAAGTTCCATCGCTTTCTACTTTTCCTCTTCGGACTTCTGGTTTTGGCATTTGAGTATTC 1138 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 163 AAAGTTCCATGGCTTTCTACTTTTCCTCTTCGGGCTTCTGGTTTTGGCATTTGAGTATTC 104 Query 1139 AAGAAGAGCATTCAGGGCTGTAAAACCCGTCAAAGTTGGACCT 1181 ||||||||| |||||||||||||| |||||||||||||||||| Sbjct 103 AAGAAGAGCTTTCAGGGCTGTAAACCCCGTCAAAGTTGGACCT 61 Score = 204 bits (110), Expect = 3e-51 Identities = 118/122 (97%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 789 AGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGCTATATCCC 848 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 AGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGCTATATCCA 572 Query 849 GTCGCTAGAATGGTAGATCTTCATGGAGGTCATCTTGTAAGCCATGAGAGGACAGAAGAG 908 |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 571 GTCGCTAGAATGGTGGATCTTCATGGAGGTCATCTTGTAAGCCACGAGAGAACAGAAGAG 512 Query 909 GT 910 || Sbjct 511 GT 510 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77409240390 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5