BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495389
Length=2769
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53170.1 | Symbols: FTSH11 | FTSH protease 11 | chr5:2156274... 4470 0.0
> AT5G53170.1 | Symbols: FTSH11 | FTSH protease 11 | chr5:21562747-21568012
REVERSE LENGTH=2787
Length=2787
Score = 4470 bits (2420), Expect = 0.0
Identities = 2671/2788 (96%), Gaps = 34/2788 (1%)
Strand=Plus/Plus
Query 1 AAGTAAAGTCTTCTCTTTTGCTCTG-AATAAAAAGAGTAAGAGAAGAAGGAAGGAAGAAG 59
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1 AAGTAAAGTCTTCTCTTTTGCTCTGAAATAAAAAGAGTAAGAGAAGAAGGAA-GAAGAAG 59
Query 60 ATAAAGGATTC-AAAAACCCTAAACACTCCAATGtcttcttctactcttcaagcttctct 118
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATAAAGGATTCAAAAAACCCTAAACACTCCAATGTCTTCTTCTACTCTTCAAGCTTCTCT 119
Query 119 ttttcttcgtcttcctctccatacttcttcctttaagccttatccttgtctcttctcttc 178
||||||||||| |||||||||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct 120 TTTTCTTCGTCCTCCTCTCCATACTTCTTCGTTTAAGCTTTACCCTTGTCTATTCTCTTC 179
Query 179 ttc-t--ttgagttttcatcctcaatctctttccagtttctaccgtttttcttcagttct 235
||| | ||||||||| ||| |||||||| || |||||||||||| |||||||||||||
Sbjct 180 TTCTTCATTGAGTTTTTGTCCACAATCTCTCTCAAGTTTCTACCGTCTTTCTTCAGTTCT 239
Query 236 tcACAACTCTCGATTTCGTCCCCTTCCTTGCTCATTGCGCCAAGACAATGTCGCTTCCGA 295
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TCACAACTCTCGATTTCGTCCCCTTCCTTGCTCATTGCGTCAAGACAATGTCGCTTCCGA 299
Query 296 TTCCGATTTCCTTCCCAAAGACTCCGCTTTTGTTACCGACGGTGAGATTACGGATTCAGC 355
||| |||||| |||||||||||||||| || || || | | |||||||||||||
Sbjct 300 TTCTGATTTCATTCCCAAAGACTCCGC--TT-TT---GA----G-G-TTACGGATTCAGC 347
Query 356 TGAGAGTAATAGATTGGTTACGGATACGGAGGTTTCGGAATTAGAGACGAATGATAGATT 415
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 348 TGAGAGTAATAGATTGGTTTCCGATACGGAGGTTTCGGAATTAGAGACGAATGATAGATT 407
Query 416 TGTGGGTGGT--------G--AAG-GGACGAG-TGAAGCGGAGGTTAGTAATGGAGTGAC 463
|||||||||| | ||| ||| ||| ||||||||||||||||||||||| ||
Sbjct 408 TGTGGGTGGTGAGGAGACGAAAAGTGGAGGAGAAGAAGCGGAGGTTAGTAATGGAGTAAC 467
Query 464 GGAGGGTAAGGAGGAAGATCAGAAGAAGAGCAAGTTTCGGATTGTTGTGTTGATGATGGC 523
||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 468 GGAAGGTAAGGAGGAAGATCAGAAGAAGAGCAAGTTTAGGATTGTGGTGTTGATGATGGC 527
Query 524 ACTATGGGCGGCTATAAAGAGAGCTATCGAGAAGGTCATGGAGTGGGAATGGTTAAGCTG 583
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 528 ACTATGGGCGGCTATAAAGAGAGCTATAGAGAAGGTAATGGAGTGGGAATGGTTAAGCTG 587
Query 584 GTGGCCTTTCTCTCGCCAGGAGAAGCGGCTCGAGAAACTTATTGCTGAGGCTGATGCTAA 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GTGGCCTTTCTCTCGCCAGGAGAAGCGGCTCGAGAAACTTATTGCTGAGGCTGATGCTAA 647
Query 644 TCCAAAGGACGCAGCTTTGCAGGGTGCTTTATTGGCTGAGCTCAACAAACACATTCCTGA 703
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 648 TCCAAAGGACGCAGCTTTGCAGGGTGCTTTATTGGCTGAGCTCAATAAGCATATTCCTGA 707
Query 704 GGCTGTTGTTCAACGGTTTGAACAAAGGGAACACGCAGTGGATAGTAGAGGAGTTGCTGA 763
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 708 GGCTGTAGTTCAACGGTTTGAACAAAGGGAACACACAGTGGATAGTAGAGGAGTTGCTGA 767
Query 764 ATATATTCGAGCTCTTGTCATTACTAATGCTATTTCGGAGTATCTTCCTGATGAACAAAC 823
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 768 ATATATTCGAGCTCTTGTCATTACAAATGCTATCTCGGAGTATCTTCCTGATGAACAAAC 827
Query 824 GGGGAAGCCATCTAGTCTTCCCGCACTGCTGCAAGAGCTGAAGCATCGTGCATCAGGCAA 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 GGGGAAGCCATCTAGTCTTCCCGCACTGCTGCAAGAGCTGAAGCATCGTGCATCAGGCAA 887
Query 884 TATGGACGAATCATTTGTGAACCCTGGTATATCTGAGAAGCAACCATTGCATGTTACCAT 943
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 888 TATGGACGAATCATTTGTGAACCCTGGTATATCTGAGAAGCAACCACTGCATGTTACCAT 947
Query 944 GGTTAATCCTAAAGTTTCAAACAAATCAAGATTTGCGCAAGAGCTTGTCTCTACGATCTT 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GGTTAATCCTAAAGTTTCAAACAAATCAAGATTTGCGCAAGAGCTTGTCTCTACGATCTT 1007
Query 1004 GTTCACAGTTGCGGTGGGATTAGTGTGG-TTAATGGGTGCAGCTGCTCTGCAAAAGTATA 1062
|||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1008 GTTCACTGTTGCGGTGGGATTAGTGTGGATTA-TGGGTGCAGCTGCTCTGCAAAAGTATA 1066
Query 1063 TTGGAAGTCTTGGAGGAATTGGAACTTCGGGTGTTGGTTCAAGCTCTTCATATTCCCCAA 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TTGGAAGTCTTGGAGGAATTGGAACTTCGGGTGTTGGTTCAAGCTCTTCATATTCCCCAA 1126
Query 1123 AAGAACTGAACAAAGAAATAACGCCAGAAAAGAATGTCAAGACATTCAAGGACGTTAAGG 1182
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1127 AAGAGCTGAACAAAGAAATAACGCCAGAAAAGAATGTCAAAACATTTAAGGACGTAAAGG 1186
Query 1183 GTTGTGATGATGCAAAGCAAGAGCTTGAGGAGGTAGTTGAATATCTTAAAAATCCATCAA 1242
|||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1187 GTTGTGATGATGCAAAACAAGAGCTCGAAGAGGTAGTTGAATATCTCAAAAATCCATCAA 1246
Query 1243 AGTTTACCCGCCTTGGAGGAAAGTTGCCAAAGGGAATTCTTCTTACCGGGGCACCTGGTA 1302
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1247 AGTTTACCCGCCTTGGAGGAAAGTTGCCAAAGGGAATTCTTCTAACCGGGGCACCTGGTA 1306
Query 1303 CTGGAAAGACATTGCTGGCCAAAGCAATTGCTGGAGAAGCTGGAGTACCCTTCTTCTATA 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CTGGAAAGACATTGCTGGCCAAAGCAATTGCTGGAGAAGCTGGAGTACCCTTCTTCTATA 1366
Query 1363 GAGCTGGATCTGAATTTGAAGAGATGTTTGTTGGAGTAGGTGCTCGCCGTGTGAGATCCT 1422
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1367 GAGCTGGATCTGAATTTGAAGAGATGTTTGTTGGGGTAGGAGCTCGCCGTGTGAGATCCT 1426
Query 1423 TGTTTCAGGCAGCGAAGAAAAAGGCACCTTGTATCATTTTCATTGACGAAATTGATGCTG 1482
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1427 TGTTTCAGGCAGCCAAGAAGAAGGCACCTTGTATTATTTTCATTGACGAAATTGATGCTG 1486
Query 1483 TTGGATCCACAAGAAAACAATGGGAAGGGCATACAAAGAAGACACTGCATCAACTACTTG 1542
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1487 TTGGATCCACAAGAAAACAATGGGAAGGGCATACAAAGAAGACATTGCATCAACTACTTG 1546
Query 1543 TTGAAATGGATGGTTTTGAGGAGAATGAGGGAATAATAGTTATGGCTGCAACAAACTTGC 1602
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1547 TTGAAATGGATGGTTTTGAGCAGAATGAGGGAATAATAGTTATGGCTGCAACAAACTTGC 1606
Query 1603 CTGATATACTTGATCCAGCCCTGACAAGACCGGGTAGATTTGATAGACATATTGTCGTAC 1662
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 CTGATATACTTGATCCAGCTCTGACAAGACCGGGTAGATTTGATAGACATATTGTCGTAC 1666
Query 1663 CCAGTCCGGATGTCCGTGGACGCCAAGAGATTTTGGAACTCTACCTCCAAGGCAAACCTA 1722
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1667 CCAGTCCGGATGTCCGTGGACGCGAAGAGATTTTGGAACTCTACCTCCAAGGCAAACCTA 1726
Query 1723 TGTCAGAAGATGTGGATGTTAAAGCAATTGCTCGTGGAACTCCTGGATTCAATGGTGCTG 1782
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 TGTCAGAAGATGTTGATGTTAAAGCAATTGCTCGTGGAACTCCTGGATTCAATGGTGCTG 1786
Query 1783 ATCTTGCAAACCTGGTAAATATTGCTGCCATAAAAGCAGCTGTTGAAGGGGCTGAGAAAT 1842
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1787 ATCTTGCAAACCTGGTAAATATTGCTGCCATAAAAGCAGCTGTTGAAGGTGCTGAGAAGT 1846
Query 1843 TATCTTCTAAACAGTTGGAATTCGCAAAGGACCGAATAGTCATGGGCACAGAGAGGAAGA 1902
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1847 TATCTTCTGAACAGTTGGAATTCGCAAAGGACCGAATTGTCATGGGCACAGAGAGGAAGA 1906
Query 1903 CAATGTTCGTATCAGAGGACTCAAAAAAGCTCACTGCATACCATGAGAGTGGTCATGCTA 1962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 CAATGTTCGTATCAGAGGACTCAAAAAAGCTCACTGCATACCATGAGAGTGGTCATGCTA 1966
Query 1963 TTGTCGCTTTGAACACGAGAGGTGCGCACCCAATCCACAAAGCGACTATAATGCCACGTG 2022
|||||||||| || |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1967 TTGTCGCTTTAAATACGAAAGGTGCGCACCCGATCCACAAAGCGACTATAATGCCACGTG 2026
Query 2023 GATCTGCATTGGGAATGGTTACACAGTTACCTTCAAACGATGAAACATCAGTGAGCAAGA 2082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2027 GATCTGCATTGGGAATGGTTACACAGTTACCTTCAAACGATGAAACATCAGTGAGCAAGA 2086
Query 2083 GGCAGTTATTAGCTCGTCTTGATGTATGTATGGGAGGAAGAGTTGCAGAGGAGCTCATCT 2142
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 GGCAGTTATTAGCTCGTCTCGATGTATGTATGGGAGGAAGAGTTGCAGAGGAGCTCATCT 2146
Query 2143 TTGGCTTGGACCATATCACCACTGGAGCAAGTAGCGATCTGTCACAGGCCACTGAACTTG 2202
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2147 TTGGCTTGGACCATATTACCACTGGAGCGAGTAGCGATCTGTCACAGGCCACTGAACTTG 2206
Query 2203 CACAATACATGGTATCGAGTTGTGGGATGAGTGAGGCAATAGGACCAGTTCATATAAAAG 2262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2207 CACAATACATGGTATCGAGTTGTGGGATGAGTGAGGCAATAGGACCAGTTCATATAAAAG 2266
Query 2263 AAAGACCAAGCTCTGATATGCAATCACGCATTGATGCAGAGGTTGTGAAGCTTCTTCGAG 2322
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 2267 AAAGACCAAGCTCTGATATGCAATCACGCATTGATGCCGAGGTTGTGAAGCTTCTTAGAG 2326
Query 2323 AGGCATATGAGCGAGTGAAATCTCTCTTGAAACGGCATGAGAAGCAGCTACACACATTAG 2382
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2327 AAGCATATGAGAGAGTGAAATCTCTCTTGAAACGGCATGAGAAGCAGCTACACACGTTAG 2386
Query 2383 CAAACGCACTTCTAGAGTATGAAACTCTAACCGCAGAGGACATAAAGCGTATTCTCCTTC 2442
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2387 CAAACGCACTTCTAGAGTATGAAACGCTAACCGCAGAGGACATAAAGCGTATTCTCCTTC 2446
Query 2443 CGAAGCAAGAAGGTGAGAAGTTTGAAGAGCAACAACAAGAAGAAGGAGACTTGGTATTGG 2502
| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2447 CAAAGCAGGAAGGCGAGAAATTTGAAGAGCAACAACAAGAAGAAGGAGACTTGGTATTGG 2506
Query 2503 CCTAGTCACATCATTCATTACCATAAACACACCTGTTTGGGTGAAAAAGGGAGGTTCAAA 2562
|||| ||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct 2507 CCTAATCACATCATTCATTACCATAAACACACTTCTTTGGGTGAAAAAGGGAGATTCAAA 2566
Query 2563 GTTTTGTACAGAGTAAATCTCCCATAGCTTCTACAACAACAACCAAAAGAAAAAACATGT 2622
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 2567 GCTTTGTACAGAGTAAATCTCCCATAGCTTCTACAACAACAACCAAAAGAAAAA-CATAT 2625
Query 2623 GAAATTATTGATCTCATGTTACAAA-TTATTGTAGTTTTTATTTCATTAGCTCATTAGTT 2681
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2626 GAAATTATTGATCTCATGTTACAAAATTATTGTAGTTTTTATTTCATTAGCTCATTAGTT 2685
Query 2682 TTCACTTCGACCTGGAACCTTTTTCCCTTTTTGACATTCTGTTCAATTCTATGAAGAAAA 2741
||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2686 TTCGCTTCGACCTTGAACCTTTTGCCCTTTTTGACATTCTGTTCAATTCTATGAAGAAAA 2745
Query 2742 ATGTAAAACAACATTGAAAAGAATGTAA 2769
||||||||||||||||||||||| ||||
Sbjct 2746 ATGTAAAACAACATTGAAAAGAAAGTAA 2773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137557757706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5