BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495427
Length=2999
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53500.1 | Symbols: | Transducin/WD40 repeat-like superfami... 4416 0.0
> AT5G53500.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:21725441-21729300 REVERSE LENGTH=3080
Length=3080
Score = 4416 bits (2391), Expect = 0.0
Identities = 2740/2904 (94%), Gaps = 41/2904 (1%)
Strand=Plus/Plus
Query 120 tttagactctctAACCAC---AGCTACTTCTTTGGGATGTGTTTGTTCCAATTTCGAAGA 176
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 184 TTTAGACTCTCT-ACCACTGTTGCTACTTCTTTGGGATGTGTTTGTTCCAATTTCGAAGA 242
Query 177 AACCTCGTGAAGACGAACCAACCCATTTTGCCTTGTAGGTTGCTTGTTTGGAAGCAAAAC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 AACCTCGTGAAGACGAACCAACCCATTTTGCCTTGTAGGTTGCTTGTTTGGAAGCAAAAC 302
Query 237 TGGCAGTTGGGGAAATTCCTCTTTTGAGAGAAAAGCA---TTCTTCTTTAAGCTCTGTTT 293
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 303 TGGCAGTTGGGGAAATTCCTCTTTTGAGAGAAAAGCATTCTTCTTCTTTAAGCTCTGTTT 362
Query 294 CATGGATTGACAATTGCTCAAGGAATAATGGATTACTTGTCTCAAGAGGAAGATTTGCAG 353
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 363 CATGGATTGACAATAGCTCAAGGAATAATGGATTACTTATCTCAAGAGGAAGATTTGCAG 422
Query 354 TTTTTCGATGCCAACGAAGAGATGATGGCATCGAATCCAAGTGGTTTTGG-TTTCGATGT 412
||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||
Sbjct 423 TTTTTCGATGCTAACGAAGAGATGATGGCATTGAATCCAAGTGGTTTTGGATTT-GATGT 481
Query 413 GTGGAATGATTCACCTGGAAGTGTTGTGGAGAGGCGGAGGAAGTTCTTGGAGTGGATGGG 472
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 482 ATGGAATGATTCACCTGGAAGTGTTGTGGAGCGGCGGAGGAAGTTCTTGGAGTGGATGGG 541
Query 473 AGTTGAAGAAGAAGATCGTGTTGAGTCGAAGGGTTCGGTCTCTGTAAGTAGTGTGGAGT- 531
|||||||||||||| ||||||||| |||||| |||||| |||| ||||||||||||||
Sbjct 542 AGTTGAAGAAGAAGGGCGTGTTGAGACGAAGGATTCGGTTTCTGGAAGTAGTGTGGAGTC 601
Query 532 TTGGTTTTGATGAAGCTGAAGAGATTTCTATTGAAGCTGAGGAGAGATCTGGAG-GTTTT 590
|| ||||||||| || |||||||| |||| |||||||||||||||||||||||| | |
Sbjct 602 TT-GTTTTGATGGAGGTGAAGAGAATTCTGTTGAAGCTGAGGAGAGATCTGGAGAG-TGC 659
Query 591 AGCAGTTCTTCTAGTCAAGTTTCGTTGTCTGGTTCAAGCGTTGAAGTTTCCGAGGAATTG 650
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCAGTTCTTCTAGTGAGGTTTCATTGTCTGGTTCAAGCGTTGAAGTTTCCGAGGAATTG 719
Query 651 TCTTTGAGAGTAGACAGAAATGTGGGTGGGTGTGATGTAACGAGAAGGCAAAGCTCTTCG 710
||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 720 TCTTTGAGAGTAGACAGAAATGTGGGTGGATGTGATGTGACGAGAAGACAAAGCTCTTCA 779
Query 711 ATGGCATCATGTTCTGA-TTCCAGGTATTGCGAAGTGAAGGAAACCGAGAAGCAGAGGAA 769
||||| ||||||||| | |||||| |||||| ||||||||||||||||||||||||||||
Sbjct 780 ATGGCGTCATGTTCT-AGTTCCAGATATTGCCAAGTGAAGGAAACCGAGAAGCAGAGGAA 838
Query 770 TATCGCAGGGCTAGTCACGAGGTTTAAGAAGGGATGGTTATCGAGGCTTCGGTCTATGGG 829
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 839 TATCGCAGGGCTAGTCACGAGTTTTAAGAAGGGATGGTTATCGAGGCTTCGGTCTATGGG 898
Query 830 CTGTACCGCGGATACAAAGATTGAATCTGGTGGTAGAATCAGAGCTTCTTTTGGTTATGG 889
||||||||||||||||| || ||||||||||||||||| |||||||||| |||||||||
Sbjct 899 ATGTACCGCGGATACAAATATCGAATCTGGTGGTAGAATGAGAGCTTCTTCTGGTTATGG 958
Query 890 TGATGTGATTTCAAGAGTTAAGGTTAAGCATTGTAAGAAACAGGCAAAGGAGCTTTCAGC 949
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 959 TGATGTGATTTCAAGAGTTAAGGTTAAGCATTGTAAGAAGCAGGCAAAGGAGCTTTCAGC 1018
Query 950 TCTTTATCAGAGTCAAGACATTAAAGCTCATGATGGTGCCATCTTGGCTATGAAATTTAG 1009
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1019 TCTTTATCAGAGTCAAGACATTAAAGCTCATGATGGTGCCATCTTGGCGATGAAATTTAG 1078
Query 1010 CGGCGATGGGAAGTTTCTTGCAAGCTCTGGTGAAGATGGGATTGTGCGTGTGTGGAAAGT 1069
| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1079 CAACGATGGGAAGTTTCTTGCAAGCTCTGGTGAAGATGGGATTGTGAGGGTGTGGAAAGT 1138
Query 1070 CGTGGAGGATAGGAGATCTAGACTACGAAGGGATTGCCTTAACGAGATAGACCCTTCGTG 1129
||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1139 CGTTGAGGATAAGAAATCTAGACTACGAAGGGATTGCCTTAACGAGATAGATCCTTCGTG 1198
Query 1130 TATATACTTTGAGGTAAATGATCTTTCTCAGTTGAAACCGGTTTTGGTGAATGAGGAGAA 1189
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1199 TATGTACTTTGAGGTAAATGATCTTTCTCAGTTGAAACCAGTTTTGGTAAATGAGGAGAA 1258
Query 1190 ACCAAAGAAGACTACAGAAAGTTTCAGGAAAACATCTGATTCAGCCTGCGTTGTCTTCCC 1249
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1259 ACCAAAGAAGACTACAGAAAGTTTCAGGAAAACATCTGATTCAGCCTGTGTTGTCTTCCC 1318
Query 1250 TCCTAAAGTTTTCCGGATAATGGAGAAACCATTATATGAATTCCGCGGGCACACGGGTGA 1309
|||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1319 TCCTAAAGTTTTTCGGATTATGGAAAAACCATTATATGAATTCCGTGGGCACACGGGTGA 1378
Query 1310 AGTCTTGGACATCTCATGGTCAAAAGATAATTATCTT-CTTTCGGCGTCAATGGATAAAA 1368
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1379 AGTCTTGGACATCTCATGGTCAAAAGATAATTAT-TTGCTTTCGGCGTCAATGGATAAAA 1437
Query 1369 CTGTCCGGCTTTGGAAAGTCGGTAGCAATGCTTGTCTTGGAGTTTTCGTTCACAATAGTT 1428
||||||| ||||||||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct 1438 CTGTCCGCCTTTGGAAAGTTGGTAGCAATGATTGTCTTGGAGTTTTCGCTCACAATAGTT 1497
Query 1429 ATGTAACCTCTGTTCAGTTCAACCCGGTAAATGAGAATTACTTCATGAGTGGTTCAATTG 1488
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1498 ATGTAACCTCTGTTCAGTTCAACCCGGTAAATGAGAATTATTTCATGAGTGGTTCAATTG 1557
Query 1489 ATGGAAAAGTTCGAATCTGGAACATTTCTGGTTGCAACGTTGTTGATTGGGCAGATCTCA 1548
||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1558 ATGGAAAGGTTCGAATTTGGAACATTTCCGGTTGCAGCGTTGTTGATTGGGCAGATCTCA 1617
Query 1549 AAGACATTATATCGGCAGTGTGTTATCGTCCGGATGGACAAGGAGGAATTATCGGTTCTC 1608
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1618 AAGACATTATATCGGCAGTGTGTTATCGTCCGGATGGACAAGGTGGAATCATCGGTTCTC 1677
Query 1609 TGACCGGAAGTTGTAGATTCTTTAACATGTCTGGAGAATATTTGGAACTGGACTCTCAGA 1668
||| ||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1678 TGAACGGGAGTTGCAGATTCTTTAACATGTCTGGAGAATTTTTAGAACTGGACTCTCAGA 1737
Query 1669 TACATTTGCATAACAAAAAGAAGTCTTCAAATAAAAGAATAACTGGGTTTCAGTTTTTAC 1728
||||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||
Sbjct 1738 TACATTTGCATAACAAAAAGAAGTCTTCAAATAAACGCATAACTGGTTTTCAGTTCTTAC 1797
Query 1729 CACAAGACCCGAAC-AAAGTCCTGGTTGTTTCCGCCGATTCCAAAGTCAGAATTATCCAA 1787
||||||| ||| || |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1798 CACAAGAACCG-ACTAAAGTCCTGGTTGTTTCCGCGGATTCCAAAGTCAGAATTCTCCAA 1856
Query 1788 GGCAACAATGTCGTCGGAAAATACAAAGGCGTTTGCAAGACGAGAAGCCTCACATCAGCG 1847
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 GGCAACAATGTCGTCAGAAAATACAAAGGCGTTTGCAAGACGAGAAGCCTCACATCAGCA 1916
Query 1848 TCTCTCACATCTGATGGAAAACACATTGTTTCAGCTTGTGAGGACTCCAATGTATATATA 1907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 TCTCTCACATCTGATGGAAAACACATTGTTTCAGCTTGTGAGGACTCCAATGTATATATA 1976
Query 1908 TGGAGTAATGATGAGGAATCAGAAACCAAAAAGATTCGATCTTTTGAACGTTTCTCCACC 1967
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1977 TGGAGCAATGATGAGGAATCAGAAACCAAAAAGATTCGATCTTTTGAACGTTTCTCCGCC 2036
Query 1968 AATGCATCCGTTGCAGCCACCTGGTGTGGATTCTCAGATCACAACACAACTCTCCCGTTT 2027
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2037 AATGCATCAGTTGCAGCAACATGGTGTGGATTCTCAGATCACAACACAACTCTCCCGTTT 2096
Query 2028 TCTTCTCCCTCTTGTC-TATCTCTCAGCGAAGGATTTGTCCCCGGATCAATATCCAAAGG 2086
|||||||| || || | |||||| || |||||||||||||||||||||||||||||||||
Sbjct 2097 TCTTCTCCATCATG-CTTATCTCACAACGAAGGATTTGTCCCCGGATCAATATCCAAAGG 2155
Query 2087 AAGCGCGACATGGCCAGAGGAAAACCTACCCGCAAATCCACTGTCTACATCCGCGATGAA 2146
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 2156 GAGTGCGACATGGCCAGAGGAAAACCTACCCGCAAATCCTCTGTCCACATCCGCGATGAA 2215
Query 2147 TGCATCTCATTACAAGTTTCTCAAGTCCTCTTACCAGAGAGCATCTAGCTCTCTATCTTG 2206
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2216 TGCATCTCATTACAAGTTTCTCAAGTCCTCTTACCAGAGAGCATCCAGCTCTCTATCTTG 2275
Query 2207 GGGTATGGTCATAGTCACAGGTGGTTGGGATGGACGGATCAGAACATTTCAGAACTATGG 2266
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||
Sbjct 2276 GGGTATGGTCATAGTCACAGGTGGTTGGGATGGACAGATAAGAACATTTCAGAACTACGG 2335
Query 2267 CTTGCCTGTGACTACTTAGAGAAAAAGCGGTTTCGTTTTCCTAACTTTGGAAAACAAATC 2326
|||||||||||||||| || ||||| | |||||||||||| ||||||||||||||||||
Sbjct 2336 GTTGCCTGTGACTACTT-GA-AAAAACCTGTTTCGTTTTCCCAACTTTGGAAAACAAATC 2393
Query 2327 AGATGCCATTGTTCCTATCTTGATAGGCACAAGCACATGGTTCTGGCAGATCATGAAGCT 2386
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2394 AGATGCCATTGTTCCTATCTTGATAGGCACAAGCACATGGTTCTAGCAGATCATGAAGCA 2453
Query 2387 ATGGTGGGTCCAAAACCAGATCCACTCTTAGATCTCTGGAGATACATCAATTAGTCAAAA 2446
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2454 ATGGTGGGTCCAAAACCAGATCCACTCTAAGATCTCTGGAGATACATCAATTAGTCAAAA 2513
Query 2447 AGTGATTCAATTCTGTTACTTCTCTTCAAGA-TT-T-ATCATCTTGTAGAAAAATCTTTC 2503
|||||| ||||||||||||||||| |||||| || | ||||||||||||||||||||||
Sbjct 2514 AGTGATACAATTCTGTTACTTCTCCTCAAGATTTATCATCATCTTGTAGAAAAATCTTTG 2573
Query 2504 AAGAAGTGGTCAGTGGGAGAGATTTTCAATCGGTTGATGTAGACGCAGGAGATGATAAGG 2563
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2574 AAGAAGTGGTCAGTGGGAGAG-GTTTCAATCGGTTGATGTAGACGCAGGAGATGATAAGG 2632
Query 2564 AACAGATGTTTCTGTTTTTGGCAATTAGTGGCGGTTGGAGATGGTTTTTAGACAGTACGG 2623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2633 AACAGATGTTTCTGTTTTTGGCAATTAGTGGCGGTTGGAGATGGTTTTTAGACAGTACGG 2692
Query 2624 ATTTGTCTGAAAATTGACAGGCGATTATTGTAGGGTCCAAAACCAAGAG-G-CAAAGTAG 2681
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2693 ATTTGTCTGAAAATTGACAGGCGATTATTGTAGGGTCCAAAACCAAGAGAGGCAAAGTAG 2752
Query 2682 TGATCATGGAAAGTAGTGGTTGAAGGAGAAAGATGTTGACGTTACTTCCCCAAGAAAGAT 2741
|||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2753 TGATCATGTAAAGGAGTGGTTGAAGGAGAAAGATGTTGACGTTACTTCCACAAGAAAGAT 2812
Query 2742 CTTCCAATGCCTTCTCCTAAGATCCtttttt---tt-AGGATTTTG-ATTTGATTAATTT 2796
||||||||||||||||||||||||||||||| || ||||||||| ||| ||| |||||
Sbjct 2813 CTTCCAATGCCTTCTCCTAAGATCCTTTTTTCAATTTAGGATTTTGTATT-GATAAATTT 2871
Query 2797 TCTAACGTAGTGATTCTTGATTCGTTGATTCTGTGTAGTTTGAGTCTCTAACGTGTAGAT 2856
|||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 2872 -CTAACGTAGTGATTATTGATTCGTTGATTATGTGTAATTTGAGTCTCTAACGTGTAGAT 2930
Query 2857 GACTTTATTATATAGCTTTGTTTTAGATTTGATTCCCACTTATTATTATAAGAGACAAAT 2916
|| ||| ||||||||||||||| ||||||||||| ||||||||||| | | |||||||||
Sbjct 2931 GAGTTTGTTATATAGCTTTGTTCTAGATTTGATTTCCACTTATTAT-A-A-GAGACAAAT 2987
Query 2917 CATTAGATTGTAAGAACTCTCCACCTCAAAGAGAGGCTCCGGGGTATT-GTAGTTGTAAA 2975
|| |||||||||||| |||||||||||||||||||||||||| | ||| |||| ||||||
Sbjct 2988 CAATAGATTGTAAGAGCTCTCCACCTCAAAGAGAGGCTCCGGAG-ATTTGTAGCTGTAAA 3046
Query 2976 TTTTGTATACAGTAAAACTTGTTT 2999
||||||| | ||||||||||||||
Sbjct 3047 TTTTGTACAGAGTAAAACTTGTTT 3070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 149096154596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5