BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495433 Length=2298 Score E Sequences producing significant alignments: (Bits) Value AT5G53570.2 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2852 0.0 > AT5G53570.2 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr5:21760590-21763462 REVERSE LENGTH=2250 Length=2250 Score = 2852 bits (1544), Expect = 0.0 Identities = 1850/1993 (93%), Gaps = 40/1993 (2%) Strand=Plus/Plus Query 330 GAATCAGATGAAGGCGTTACGGAGAAGCTATActtcaacgtcttctgggaattcatcttc 389 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 257 GAATCAGATGAAGGCGTTACGGAGAAGCTATACTTCAACGTCTTCTGGGAATTCA----- 311 Query 390 ttcttcttcttcttcgttaccttcttcttcgtcttcttcgttaccatcttcttcttcttc 449 |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 312 -TCTTCTTCGTCTTCGTTACCTTCTTCGTCTTCTTCTTCGTTACCATCTTCTTCTTCTTC 370 Query 450 ttcacctcctccttctaattctaattcttcttcttcgaattc---ttcttcttcgaattc 506 |||||||||| ||||||||||||| ||||| ||||||||| |||||||||| || Sbjct 371 TTCACCTCCTTCTTCTAATTCTAA---TTCTTATTCGAATTCTAATTCTTCTTCG---TC 424 Query 507 ttcttcgtcgtggatacatcttcgttctgttctcttTGTGGCGAATCTTTCGTCTCCATC 566 ||| ||||||||||| ||||| || || |||||||||||||| |||||||||||||| || Sbjct 425 TTCGTCGTCGTGGATCCATCTACGGTCGGTTCTCTTTGTGGCTAATCTTTCGTCTCCGTC 484 Query 567 TTCAGTTACTTCTTCCGATCGCCGGCGGAAATCACCGTGGTCTCGCCGGAAAAGAAAATG 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 TTCAGTTACTTCTTCCGATCGCCGGCGGAAATCACCGTGGTCTCGCCGGAAAAGAAAATG 544 Query 627 GGCATTGACGCCGCATCAATGGAGGAGTTTGTTTACACCGGAGGGTAAACTCCGTGATGG 686 |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 545 GGCATTGACGCCACATCAATGGAGGAGTTTATTTACACCGGAGGGAAAACTCCGTGATGG 604 Query 687 TGGAGTTGGATTTCTGAAGAAAGTTAGAAGCAGAGGTGTTGATCCAAGTATTCGTGCAGA 746 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 TGGAGTTGGATTCCTGAAGAAAGTTAGAAGCAGAGGTGTTGATCCAAGTATTCGTGCAGA 664 Query 747 AGTGTGGCTGTTCTTGCTCGGAGTCTATGATTTGAACAGTACTAGTGAAGAAAGAGAAGC 806 ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 665 AGTGTGGCTGTTCTTACTCGGAGTTTATGATTTGAATAGTACTAGTGAAGAAAGAGAAGC 724 Query 807 AGTTAAAACTCAAAAAAGGAAGGAGTATGAGAAACTACAGAGACGATGCCAGATGCTTCT 866 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 725 AGTGAAAACTCAAAAAAGGAAGGAGTATGAGAAACTACAGAGACGATGTCAGATGCTTCT 784 Query 867 AAAGTGCGGCAATGGGAA-TACTAATAATCTTGAGGAACTTCCTTCGGACGAGGCAAACG 925 |||||||| ||| |||| ||| ||||||||||||| ||||| || || ||||||||| Sbjct 785 CAAGTGCGGTAAT-GGAAGTACCGATAATCTTGAGGAGCTTCCATCTGATGAGGCAAACA 843 Query 926 GTCAATGTGTTCGGTTCGTGGATGATTATAAGATTACGGGATCAATGACAAATCAAGATG 985 ||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| Sbjct 844 GTCAATGTGTTCGGTTCGTGGATGATTATAAGATTACAGGACCAATGACAAGTCAAGATG 903 Query 986 TGGTCTCTGCTGTGAACACTGATTCTTCTGATACAGACTCTTGTGAAGATAATGAAGATG 1045 | || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 904 TTGTTTCTGCTTTGAACACTGATTCTTCTGATACAGACTCTTGTGAAGATAATGAAGATG 963 Query 1046 TTCTACTACTCTCATCTTTTGTATACAGCGATGCGAAAAAA-CCTGAGGAGGATAATAGT 1104 || |||||||||||||||||| | ||||||||| |||||| || ||||||||||||||| Sbjct 964 TTTTACTACTCTCATCTTTTGCACACAGCGATG-AAAAAAAGCCGGAGGAGGATAATAGT 1022 Query 1105 AATAACAATTCTGAAGAGAGTAGTTCTCCTCTTGTA------G---CTGAGATCCAAATA 1155 ||||||||||||||||||| |||||||| ||||||| | ||||| ||||| || Sbjct 1023 AATAACAATTCTGAAGAGAATAGTTCTCTTCTTGTAGCTGCTGCTTCTGAGGTCCAAGTA 1082 Query 1156 GAAGTTGCGGTACACGAAGATTTCTCTACGTGGCAACGTATCATCCGGCTTGATGCTTTA 1215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083 GAAGTTGCGGTACACGAAGATTTCTCTACGTGGCAACGTATCATCCGGCTTGATGCTTTA 1142 Query 1216 CGTGCGGATTCTGAGTGGGCAACA-TATTCTCCATATTCAACTGCAATCACTGAAAGCAA 1274 || ||||||||||| ||||||| | ||||||||||||||||| |||||||| |||||||| Sbjct 1143 CGAGCGGATTCTGAATGGGCAA-ATTATTCTCCATATTCAACAGCAATCACAGAAAGCAA 1201 Query 1275 AGCTCG-TGGTTTAGCTGAGTCTGTCGGGTTAAAAGACTATGATCACTTAGAAAGCTGCA 1333 |||||| || ||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1202 AGCTCGCAGG-TTAGCCGAATCTGTCGGGTTAAAAGACTATGATCACTTAGAAAGCTGCA 1260 Query 1334 GGCTTTACCACGCTGCACGACTAGTTGCAATTCTTGAAGCTTATGCTATGTATGATCCTG 1393 |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1261 GGCTATACCACGCAGCACGGTTAGTTGCAATTCTTGAAGCTTATGCTATGTATGATCCTG 1320 Query 1394 AGATAGGCTACTGCCAAGGAATGAGTGATCTGTTATCTCCTATCCTCGCTGTGATCTCAG 1453 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1321 AGATAGGCTACTGTCAAGGAATGAGTGATCTGTTATCTCCAATCCTCGCTGTGATCTCAG 1380 Query 1454 AGGATCACGAGGCTTTCTGGTGCTTTGTTGGTTTTATGAAGAAAGCTCGGCATAATTTCA 1513 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1381 AGGATCACGAGGCTTTCTGGTGCTTTGTTGGTTTCATGAAGAAAGCTCGGCACAATTTCA 1440 Query 1514 GGCTCGATGAAGCAGGGATTCAAAGGCAGCTAAGTATTGTTTCAAAGATCATAAAAAACA 1573 |||| || ||||||||||||||||| |||||||| ||||| ||||||||||||||||| | Sbjct 1441 GGCTTGACGAAGCAGGGATTCAAAGACAGCTAAGCATTGTATCAAAGATCATAAAAAATA 1500 Query 1574 AAGACTCTCAGCTCTATAAACACTTGGAGAATCTTCAAGCCGAGGATTGTAGTTTCGTTT 1633 ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1501 AAGACTCTCAGCTTTATAAACACTTGGAGAATCTTCAAGCAGAAGATTGTAGTTTCGTTT 1560 Query 1634 ACAGGATGGTGCTCGTTATGTTTAGGAGGGAGTTGAGTTTTGAACAGACACTTTGTCTCT 1693 ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1561 ACAGGATGGTGCTTGTTATGTTTAGGAGGGAGTTGAGTTTTGAACAGACGCTGTGTCTCT 1620 Query 1694 GGGAAGTGATGTGGGCTGATCAAGCCGCCATTAGAGCTGGAGTTGGGAAATCGCCATGGA 1753 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1621 GGGAAGTGATGTGGGCTGATCAAGCTGCCATTAGAGCTGGAGTTGGGAAGTCGCCATGGA 1680 Query 1754 GCAGAATCCGGCAACAAGCACCACCAACAGATGATCTGTTGCTCTACGCAATCGCGGCAC 1813 |||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||| Sbjct 1681 GCAGAATCCGGCAACAAGCACCGCCAACGGATGATTTGTTGCTCTATGCAATCGCGGCGT 1740 Query 1814 TAGTACTACGTAGGAAACTGATCATACAGAAATACAGTAGTATGGATGAGATTGTGGAAG 1873 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1741 TAGTACTACGTAGGAAACTGATCATACAGAAATACAGTAGTATGGATGAGATTGTGGAAG 1800 Query 1874 AGTGTAATAGCATGGCTGGTCAGCTTAATGTCTGGAAGCTTCTAGATGATGCGCATCATC 1933 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1801 AGTGTAATAGCATGGCTGGTCAGCTTAATGTCTGGAAGCTTCTTGATGATGCCCATCATC 1860 Query 1934 TTGTCGTGACGCTTCACGACAAGATTGAAACTCTTTCTCAATCACACAGTATTTGATGAA 1993 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1861 TTGTCGTGACGCTTCACGACAAGATTGAAACTCTTTCTCAATCACAGAGTATTTGATGAA 1920 Query 1994 GAAGTCGATTAAAGCCAGAAATGAAGTGTTTCCACTACACAATC-CCCTTGCACTCGTCT 2052 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1921 GAAGTCGATCAAAGCCAGAAATGAAGTGTTTCCACTACACAAAAGCCCTTGCACTCGTCT 1980 Query 2053 GGCTGCGTTTTGTCAAGGTTTTAAGTTTGTCGCGGTTTGGTTCTTACTGATTTCACTCCT 2112 ||||||||||| ||||||||| |||||||| |||||||||||||||| | |||||||||| Sbjct 1981 GGCTGCGTTTTCTCAAGGTTTAAAGTTTGTTGCGGTTTGGTTCTTACCGTTTTCACTCCT 2040 Query 2113 CTCT--CTT-CTTCTTTCTTTTTGTTTCCTCGTCACACAGAGAAA-CACAATACTA-T-- 2165 |||| ||| ||||||||||||||||| ||| ||||||||||||| |||||||||| | Sbjct 2041 CTCTTTCTTTCTTCTTTCTTTTTGTTTACTCATCACACAGAGAAAACACAATACTACTAT 2100 Query 2166 CCTCATCACTTTTATTGTAGTACTAATGAAAAAGACAAAACAATATTCCTGTTGAAATGT 2225 ||| ||| |||||||||||||||||||||||||||||| |||||||| |||| |||||| Sbjct 2101 CCTTATCGCTTTTATTGTAGTACTAATGAAAAAGACAAGGCAATATTCTTGTTAAAATGT 2160 Query 2226 GACGGATGAGTCTGAAACTGTCATTTCCACAACTGTATGAATCATATTTGTTCAATTGTA 2285 ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 2161 AACGGATGAGTCTGAAACTGTCATTTCCACAATTGTATGAAACATATTTGTTCAATTGTA 2220 Query 2286 GAAACCCAGTTTC 2298 |||| |||||||| Sbjct 2221 GAAATCCAGTTTC 2233 Score = 198 bits (107), Expect = 2e-49 Identities = 206/248 (83%), Gaps = 29/248 (12%) Strand=Plus/Plus Query 1 AGAGAGGCTTCAGTTGTTGGATGcttttgctttttttccttcttcttcatcttc-ttctt 59 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 12 AGAGAGGCTTCAGTTGTTGGATGCTTTTGCTTTTTTTCCTTCTTCTTCGTCTTCTTTCTT 71 Query 60 cgtctctcttttttttttttCAGTTTCGGCGTGCTAAAGAAGACGATA-AG-AGTCAATC 117 |||||||| || |||||||||||||||||||||| |||||||||||| || | |||||| Sbjct 72 CGTCTCTC--TTCTTTTTTTCAGTTTCGGCGTGCTGAAGAAGACGATAGAGTAATCAATC 129 Query 118 A-A-T--CACAG---T----G---A-------tttt-ttttCTTAAACATCTCATGCTTG 155 | | | | || | | | |||| |||||||||||| |||||||||| Sbjct 130 ACAGTGAGAGAGATTTGAGGGTAAATCTGTCCTTTTCTTTTCTTAAACAACTCATGCTTG 189 Query 156 ATTTCTGCTACGGCGGAGGAGGAGGAAGAGGAGGTTTACTTTA-CA-ATCACCGGGGAAG 213 |||||||||||||||||||||||||| || |||||||||||| | ||||||||| || Sbjct 190 ATTTCTGCTACGGCGGAGGAGGAGGAGGAAGAGGTTTACTTTTGCTTATCACCGGGAAAT 249 Query 214 TTCCGGCG 221 |||||||| Sbjct 250 TTCCGGCG 257 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 114055638240 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5