BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495435 Length=944 Score E Sequences producing significant alignments: (Bits) Value AT5G53588.1 | Symbols: CPuORF50 | conserved peptide upstream op... 1236 0.0 AT5G53590.1 | Symbols: | SAUR-like auxin-responsive protein fa... 1236 0.0 > AT5G53588.1 | Symbols: CPuORF50 | conserved peptide upstream open reading frame 50 | chr5:21771811-21772794 FORWARD LENGTH=984 Length=984 Score = 1236 bits (669), Expect = 0.0 Identities = 865/952 (91%), Gaps = 43/952 (5%) Strand=Plus/Plus Query 27 CTCTTCATGCTTAGCCTATCATGAGCAACATCCCTAGATCTCTCACCGACTCAGATCTTT 86 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 38 CTCTTCATGCTTAGCCTATCATGAGCAACATCCCTAGATCTCTCACCGACTCAGATCTTT 97 Query 87 CTCT-CTTCCTTCTCATTATATCTTCTGCTGTTGATCCTTGGCCTTTTTCTATCACTGTT 145 |||| || | |||||| || ||||||||||||||||||||||||||||||||||| ||| Sbjct 98 CTCTATTTAC-TCTCATAATCTCTTCTGCTGTTGATCCTTGGCCTTTTTCTATCACCGTT 156 Query 146 TTTTAGCATCAAC-AACCTCACCGGAAAATCTCTAA-AA--ACCACCTTTTAACACTTCT 201 ||||||||||||| || ||||||||||||||||||| || |||||| |||||||||||| Sbjct 157 TTTTAGCATCAACAAAACTCACCGGAAAATCTCTAACAACCACCACCGTTTAACACTTCT 216 Query 202 CTTCCTCCTCGTCGATCG-TTTT-AACCAATCTTTGTGTGTTTCTTGTTTGGTTTTTCGG 259 |||||||||||||||||| |||| |||||||| || |||||||||||||||||||||||| Sbjct 217 CTTCCTCCTCGTCGATCGTTTTTAAACCAATC-TT-TGTGTTTCTTGTTTGGTTTTTCGG 274 Query 260 TGAAAAAAGATTCCTTCTTCTTAATGGGTTTTGAAGAAAACCAAAAACAGAGTCCAAAAC 319 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 275 TG-AAAAAGATTCCTTCTTCTTAATGGGTTTTGAAGAAAACCAAAAACAGAGTCCAAAAC 333 Query 320 AGAGTCCGAATCAGATCAAGCATATGGTGTTCAACTTTCACTTTCATGTTCCTCATCTCC 379 ||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 334 AGAGTCCGAATCATATCAAGCATATGGTGTTCAAGTTCCACTTCCATGTTCCTCATCTCC 393 Query 380 ACATACTCcatcatcatcaccatcatcatca---tGATGTTCCTAAAGGCTGTGTAGCGA 436 ||||||||| |||||||||||| || || || |||||||||||||||||||||||||| Sbjct 394 ACATACTCCCTCATCATCACCACCACCACCACCATGATGTTCCTAAAGGCTGTGTAGCGA 453 Query 437 TTATGGTGGGACATGAAGACGATGAAGAAGGTCTACACAGATTTGTTGTTCCGTTGGTGT 496 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 454 TTATGGTGGGACACGAAGACGATGAAGAAGGTCTACATAGATTTGTTGTTCCGTTGGTGT 513 Query 497 TCTTGAGTCATCCTTTGTTCTTGGATCTCTTGAAAGAAGCTGAAAAAGAGTATGGATTCA 556 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 514 TCTTGAGCCATCCTTTGTTCTTGGATCTCTTGAAAGAAGCTGAAAAAGAGTATGGATTCA 573 Query 557 AGCACGATGGTCCGATTACTATTCCTTGCTGTGTTGATGAGTTTAAGCATGTTCAAGAAA 616 |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 574 AGCATGATGGTCCGATTACGATTCCTTGCGGTGTTGATGAGTTTAAGCATGTTCAAGAAG 633 Query 617 TTATCGACGAGGAGACTCATCGCCGTCATAGTCACGGTGGTCACAGCCACAACAACCATA 676 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 634 TTATCGACGAGGAGACTCATCGCCGTCATAGTCACGGTGGTCACGGCCACAACAACCATA 693 Query 677 ACCACCACAACAACCATCTACGTTGTTTTTAAAGATCTCTAATTCGATTTGTTGGTTTGC 736 |||| |||||||||||| | || ||||| ||||||||| |||||||||||||||||||| Sbjct 694 ACCATCACAACAACCATTTGCGATGTTTCTAAAGATCTATAATTCGATTTGTTGGTTTG- 752 Query 737 TCTGGTTTGGTTTGACATGTAATTGGTTTGATTTGACAGATTTCTCTTTTGAGATTGTTT 796 | |||||||||| |||| |||||||||||||||||||||||||||||||||||| || Sbjct 753 ---G-TTTGGTTTGAGATGTCATTGGTTTGATTTGACAGATTTCTCTTTTGAGATTGATT 808 Query 797 AGTTTGCTTAA-ttttt--ttt--G--A-T--GATGATGAT-A-A--T-GAT---GA--A 836 ||||||||||| ||||| ||| | | | ||||||||| | | | ||| || | Sbjct 809 AGTTTGCTTAACTTTTTGCTTTTAGTTAGTTTGATGATGATGATAAATTGATAATGATGA 868 Query 837 AAAA-TCAAGAGAGCCATTAAATGTGAATGCtttttttttAAG--AA-TGTAATCGTGAG 892 |||| |||| ||||| ||| ||||||| | ||||||||| || |||||||||||| Sbjct 869 AAAAATCAAAAGAGCAATTGAATGTGATTTTTTTTTTTTTTTTTTAAATGTAATCGTGAG 928 Query 893 AAATAAGGGAATAATCATATTATTTGATTTTTATTTTATTGAAAGGAATGTG 944 |||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 929 GAATAAGGGAAGAATCATATTATTTGATTTTTATTTTATGGAAAGGAATGTG 980 > AT5G53590.1 | Symbols: | SAUR-like auxin-responsive protein family | chr5:21771811-21772794 FORWARD LENGTH=984 Length=984 Score = 1236 bits (669), Expect = 0.0 Identities = 865/952 (91%), Gaps = 43/952 (5%) Strand=Plus/Plus Query 27 CTCTTCATGCTTAGCCTATCATGAGCAACATCCCTAGATCTCTCACCGACTCAGATCTTT 86 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 38 CTCTTCATGCTTAGCCTATCATGAGCAACATCCCTAGATCTCTCACCGACTCAGATCTTT 97 Query 87 CTCT-CTTCCTTCTCATTATATCTTCTGCTGTTGATCCTTGGCCTTTTTCTATCACTGTT 145 |||| || | |||||| || ||||||||||||||||||||||||||||||||||| ||| Sbjct 98 CTCTATTTAC-TCTCATAATCTCTTCTGCTGTTGATCCTTGGCCTTTTTCTATCACCGTT 156 Query 146 TTTTAGCATCAAC-AACCTCACCGGAAAATCTCTAA-AA--ACCACCTTTTAACACTTCT 201 ||||||||||||| || ||||||||||||||||||| || |||||| |||||||||||| Sbjct 157 TTTTAGCATCAACAAAACTCACCGGAAAATCTCTAACAACCACCACCGTTTAACACTTCT 216 Query 202 CTTCCTCCTCGTCGATCG-TTTT-AACCAATCTTTGTGTGTTTCTTGTTTGGTTTTTCGG 259 |||||||||||||||||| |||| |||||||| || |||||||||||||||||||||||| Sbjct 217 CTTCCTCCTCGTCGATCGTTTTTAAACCAATC-TT-TGTGTTTCTTGTTTGGTTTTTCGG 274 Query 260 TGAAAAAAGATTCCTTCTTCTTAATGGGTTTTGAAGAAAACCAAAAACAGAGTCCAAAAC 319 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 275 TG-AAAAAGATTCCTTCTTCTTAATGGGTTTTGAAGAAAACCAAAAACAGAGTCCAAAAC 333 Query 320 AGAGTCCGAATCAGATCAAGCATATGGTGTTCAACTTTCACTTTCATGTTCCTCATCTCC 379 ||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 334 AGAGTCCGAATCATATCAAGCATATGGTGTTCAAGTTCCACTTCCATGTTCCTCATCTCC 393 Query 380 ACATACTCcatcatcatcaccatcatcatca---tGATGTTCCTAAAGGCTGTGTAGCGA 436 ||||||||| |||||||||||| || || || |||||||||||||||||||||||||| Sbjct 394 ACATACTCCCTCATCATCACCACCACCACCACCATGATGTTCCTAAAGGCTGTGTAGCGA 453 Query 437 TTATGGTGGGACATGAAGACGATGAAGAAGGTCTACACAGATTTGTTGTTCCGTTGGTGT 496 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 454 TTATGGTGGGACACGAAGACGATGAAGAAGGTCTACATAGATTTGTTGTTCCGTTGGTGT 513 Query 497 TCTTGAGTCATCCTTTGTTCTTGGATCTCTTGAAAGAAGCTGAAAAAGAGTATGGATTCA 556 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 514 TCTTGAGCCATCCTTTGTTCTTGGATCTCTTGAAAGAAGCTGAAAAAGAGTATGGATTCA 573 Query 557 AGCACGATGGTCCGATTACTATTCCTTGCTGTGTTGATGAGTTTAAGCATGTTCAAGAAA 616 |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 574 AGCATGATGGTCCGATTACGATTCCTTGCGGTGTTGATGAGTTTAAGCATGTTCAAGAAG 633 Query 617 TTATCGACGAGGAGACTCATCGCCGTCATAGTCACGGTGGTCACAGCCACAACAACCATA 676 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 634 TTATCGACGAGGAGACTCATCGCCGTCATAGTCACGGTGGTCACGGCCACAACAACCATA 693 Query 677 ACCACCACAACAACCATCTACGTTGTTTTTAAAGATCTCTAATTCGATTTGTTGGTTTGC 736 |||| |||||||||||| | || ||||| ||||||||| |||||||||||||||||||| Sbjct 694 ACCATCACAACAACCATTTGCGATGTTTCTAAAGATCTATAATTCGATTTGTTGGTTTG- 752 Query 737 TCTGGTTTGGTTTGACATGTAATTGGTTTGATTTGACAGATTTCTCTTTTGAGATTGTTT 796 | |||||||||| |||| |||||||||||||||||||||||||||||||||||| || Sbjct 753 ---G-TTTGGTTTGAGATGTCATTGGTTTGATTTGACAGATTTCTCTTTTGAGATTGATT 808 Query 797 AGTTTGCTTAA-ttttt--ttt--G--A-T--GATGATGAT-A-A--T-GAT---GA--A 836 ||||||||||| ||||| ||| | | | ||||||||| | | | ||| || | Sbjct 809 AGTTTGCTTAACTTTTTGCTTTTAGTTAGTTTGATGATGATGATAAATTGATAATGATGA 868 Query 837 AAAA-TCAAGAGAGCCATTAAATGTGAATGCtttttttttAAG--AA-TGTAATCGTGAG 892 |||| |||| ||||| ||| ||||||| | ||||||||| || |||||||||||| Sbjct 869 AAAAATCAAAAGAGCAATTGAATGTGATTTTTTTTTTTTTTTTTTAAATGTAATCGTGAG 928 Query 893 AAATAAGGGAATAATCATATTATTTGATTTTTATTTTATTGAAAGGAATGTG 944 |||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 929 GAATAAGGGAAGAATCATATTATTTGATTTTTATTTTATGGAAAGGAATGTG 980 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46165181093 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5