BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495448 Length=430 Score E Sequences producing significant alignments: (Bits) Value AT5G53710.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 516 8e-146 > AT5G53710.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21805259-21805794 REVERSE LENGTH=536 Length=536 Score = 516 bits (279), Expect = 8e-146 Identities = 363/401 (91%), Gaps = 16/401 (4%) Strand=Plus/Plus Query 1 ATGAAGAAGAGACTAAGCTTGAAGCAAATCTTGGTGACTCTCTCCAACCTCGGTGTATGT 60 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 42 ATGAAGAAGAGACTAAGCTTGAAGCAAATCTTGGTGACTCTCTCCAAACTTGGTGTATGT 101 Query 61 TTGTGCGTAAAACATATTGATAGTAACAAGATTCAAGATTCTAACACAGAGATCAAGAAC 120 ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 102 TTGTGCGTAAAACATCTTGATAGTAACAAAATTCAAGTTTCTAACACAGAGATCAAGAAC 161 Query 121 GGATCTCTATGTCCCCA--A-G-A-CGAT-TC---------GGCTATCGAAGGAAGAAGG 165 |||||| |||||||| | | | | | | || || ||| |||||||||||| Sbjct 162 GGATCTGTATGTCCCGAGGATGAATTGGTGTCTGAAGAGAAGGTTATGGAAGGAAGAAGG 221 Query 166 AGAATCAAAGTGGTGATAACTAGGAAACAGCTGGAGCGCTTGTTGGCGAAGCAAGTTTCA 225 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 222 AGAATCAAAGTGGTGATAACTAGGAAACAGCTGGATCGCTTGTTAGCGAAGCAAGTTTCA 281 Query 226 TTGGAGCAGCTTGTTTTTGTGAATCAGAGAACCTCTCTCAGTTGTTTTGACGACAGTAAG 285 ||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 282 TTGGAGCAGCTGGCTTTTGTGAATCAGAGAACCTCTCTCAGTTGTTTTGACGAGAGTAAA 341 Query 286 TGGATCCCAAGGCTTGAATCTATCCATGAATCACCTGAATTGTAAAATTTTGGGTTTTAA 345 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 342 TGGATCCCAAGGCTTGAATCTATCCATGAATCACCTGAATTGTAAGATTTTGGGTTTTAG 401 Query 346 ATGTTTCTTCAGACTTTGCGGCTCATGGTGTTGTATATATC 386 ||||||||||||| ||||| ||| |||||||||| |||||| Sbjct 402 ATGTTTCTTCAGATTTTGCAGCTTATGGTGTTGT-TATATC 441 Score = 78.7 bits (42), Expect = 4e-14 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 383 TATCATAAAGTCTTTTTGTAACTTCAGTGTTATTTAACTGAATAAGTT 430 ||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 487 TATCATAAACTCTTTTTGTAACTTCAGTGTTATTTAACTGAAAAAGTT 534 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20408706094 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5