BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495448

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53710.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   516    8e-146


> AT5G53710.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant 
structures; EXPRESSED DURING: 4 anthesis, C globular stage, 
petal differentiation and expansion stage; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21805259-21805794 
REVERSE LENGTH=536
Length=536

 Score =  516 bits (279),  Expect = 8e-146
 Identities = 363/401 (91%), Gaps = 16/401 (4%)
 Strand=Plus/Plus

Query  1    ATGAAGAAGAGACTAAGCTTGAAGCAAATCTTGGTGACTCTCTCCAACCTCGGTGTATGT  60
            ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  42   ATGAAGAAGAGACTAAGCTTGAAGCAAATCTTGGTGACTCTCTCCAAACTTGGTGTATGT  101

Query  61   TTGTGCGTAAAACATATTGATAGTAACAAGATTCAAGATTCTAACACAGAGATCAAGAAC  120
            ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct  102  TTGTGCGTAAAACATCTTGATAGTAACAAAATTCAAGTTTCTAACACAGAGATCAAGAAC  161

Query  121  GGATCTCTATGTCCCCA--A-G-A-CGAT-TC---------GGCTATCGAAGGAAGAAGG  165
            |||||| |||||||| |  | | |  | | ||         || ||| ||||||||||||
Sbjct  162  GGATCTGTATGTCCCGAGGATGAATTGGTGTCTGAAGAGAAGGTTATGGAAGGAAGAAGG  221

Query  166  AGAATCAAAGTGGTGATAACTAGGAAACAGCTGGAGCGCTTGTTGGCGAAGCAAGTTTCA  225
            ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  222  AGAATCAAAGTGGTGATAACTAGGAAACAGCTGGATCGCTTGTTAGCGAAGCAAGTTTCA  281

Query  226  TTGGAGCAGCTTGTTTTTGTGAATCAGAGAACCTCTCTCAGTTGTTTTGACGACAGTAAG  285
            ||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  282  TTGGAGCAGCTGGCTTTTGTGAATCAGAGAACCTCTCTCAGTTGTTTTGACGAGAGTAAA  341

Query  286  TGGATCCCAAGGCTTGAATCTATCCATGAATCACCTGAATTGTAAAATTTTGGGTTTTAA  345
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct  342  TGGATCCCAAGGCTTGAATCTATCCATGAATCACCTGAATTGTAAGATTTTGGGTTTTAG  401

Query  346  ATGTTTCTTCAGACTTTGCGGCTCATGGTGTTGTATATATC  386
            ||||||||||||| ||||| ||| |||||||||| ||||||
Sbjct  402  ATGTTTCTTCAGATTTTGCAGCTTATGGTGTTGT-TATATC  441


 Score = 78.7 bits (42),  Expect = 4e-14
 Identities = 46/48 (96%), Gaps = 0/48 (0%)
 Strand=Plus/Plus

Query  383  TATCATAAAGTCTTTTTGTAACTTCAGTGTTATTTAACTGAATAAGTT  430
            ||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  487  TATCATAAACTCTTTTTGTAACTTCAGTGTTATTTAACTGAAAAAGTT  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20408706094


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5