BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495469
Length=1630
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53900.2 | Symbols: | Serine/threonine-protein kinase WNK (... 2379 0.0
AT5G53895.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 82.4 1e-14
> AT5G53900.2 | Symbols: | Serine/threonine-protein kinase WNK
(With No Lysine)-related | chr5:21881142-21883416 REVERSE LENGTH=1650
Length=1650
Score = 2379 bits (1288), Expect = 0.0
Identities = 1548/1664 (93%), Gaps = 55/1664 (3%)
Strand=Plus/Plus
Query 1 GTCGCCGGGATTTCGATTAACATAATTCTG-TTCACTAAAAAAGACTCTGAACaaaaaaa 59
|||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 1 GTCGCCGGGATTTCGATTAACATAATTCTGTTTCACTAAAAAAGACTCAGAAGAAAAAAG 60
Query 60 aaaaaGAACAGTAGTGAGAGAAAGTAAGAGAGAGATGAGACTCTGTGGTTGACAAAACTC 119
||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||
Sbjct 61 AAAAAGAACAGTAGTGAGAGAAAGT---A-AGAG-CGAG--TCTGTGGTTGACAAAACTC 113
Query 120 TTTTGTTCTCACAGAG-AAAGATAACTTATTTTTCTTTTCTTTTAAATATTTGGAAACAA 178
||||| |||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 114 TTTTGCTCTCGCAGAGAAAAGATAACTTATTTTT-TTTTCTTTAAAATATTTGGAAACAA 172
Query 179 AAGAGACTCTGTCTGAAGAAAGCTAAAGACTTAAAGACTTGTGATGATTCTTGACAAAAG 238
|||||||||||||| | ||| |||| | |||||||||||||||||||||||||||||
Sbjct 173 AAGAGACTCTGTCT---G-AAG--AAAG-C-TAAAGACTTGTGATGATTCTTGACAAAAG 224
Query 239 AAGCTGTGTCTTTGGAGAACTTTGAAGT-agagagacagagaaagacaaagagagagaCA 297
|| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 225 AAACTGTGTCTTTGGAGAACTCTGAAGTAAGAGAGACAGAGAAAGACAAAGAGAGAGACA 284
Query 298 TGGTGGGCTCAGGAGCT---GGAGGAGATAGAAGCAAAGATGCTGTAGGAATGATGGCAC 354
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 285 TGGTGGGCTCAGGAGTTGGAGGAGGAGATAGAAGCAAAGATGCTGTAGGAATGATGGCAC 344
Query 355 TTCATGAAGCACTTAGAAGCGTCTGTCTTAACTCCGACTGGATTTACTCTGTTTTCTGGA 414
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 345 TTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGA 404
Query 415 CCATTCGTCCCCGACCGAGGGTCCGTGGTGGTAATGGTTGCAAGATTGGTGACGAAAGTG 474
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 405 CCATTCGTCCCCGACCGAGGGTCCGTGGTGGTAATGGCTGCAAGATTGGTGATGAAAGTG 464
Query 475 GCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGTGGT----G--G-AG-GAAG----TT 522
|||||||||||||||||||||||||||||||||||||| | | || |||| ||
Sbjct 465 GCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGTGGTGGAGGAAGAAGTGAAGATCTTT 524
Query 523 GTCTGGAAACAGACATTGAAGG---TGAAGAAGATCTTGTCAGAAAAGCTTTCAGCAAAA 579
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 525 GTCTGGAAACAGACATTGAAGGTCATGAAGAAGATCTTGTCAGAAAAGCTTTCAGCAAGA 584
Query 580 TGTCCATACAGTTATATAATTATGGAGAAGGATTGATGGGTAAAGTTGCTTCTGATAAAT 639
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TGTCCATTCAGTTATATAATTATGGAGAAGGATTGATGGGTAAAGTTGCTTCTGATAAAT 644
Query 640 GTCACAAGTGGGTATTCAAAGAACCATCTGAATCTGAACCAAATCTTGCTAATTACTGGC 699
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GTCACAAGTGGGTTTTCAAAGAACCATCTGAATCTGAACCAAATCTTGCTAATTACTGGC 704
Query 700 AGAGTTCTTTTGATGCTCTTCCTCCAGAATGGACCGACCAATTCGAATCAGGAATCCAGA 759
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 705 AAAGTTCTTTTGATGCTCTTCCTCCAGAATGGACCGACCAATTCGAATCAGGCATTCAGA 764
Query 760 CAATTGCTGTGATTCAAGCTGGACATGGTCTGTTACAGCTAGGTTCTTGCAAGATTATTC 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CAATTGCTGTGATTCAAGCTGGACATGGTCTGTTACAGCTAGGTTCTTGCAAGATTATTC 824
Query 820 CAGAAGATCTTCATTTTGTGCTGAGGATGAGGCAAATGTTTGAATCAATTGGTTATAGAT 879
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 825 CAGAAGATCTTCATTTTGTGCTAAGGATGAGGCAAATGTTTGAATCAATTGGTTACAGAT 884
Query 880 CAGGTTTTTACCTCTCGCAGCTCTTCTCTTCAAACCGAACCGCGACTACTCCATCTTCTT 939
|||||||||||||||| |||||||||||||||||||||||||||||| | | ||||||||
Sbjct 885 CAGGTTTTTACCTCTCACAGCTCTTCTCTTCAAACCGAACCGCGACT-C-C-ATCTTCTT 941
Query 940 CTTCGGTTCCAAACCAGATACCTCAGTCTCAAGCTTTTAACTGGGGATCACACTCTCCTT 999
| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 942 CCACGGTTCCAAACCAGATACCTCAGTCTCAAGGTTTTAACTGGGGATCACACTCACCTT 1001
Query 1000 TGTTACCTTCCCCTAGTTTTCAGAACCAACTACCTGCATCAGCCCGATTCGGTTTTCTTC 1059
|||||||||||||||| |||||||||||||||||||| ||||| |||||||||| ||||
Sbjct 1002 TGTTACCTTCCCCTAGCTTTCAGAACCAACTACCTGCTTCAGCTAGATTCGGTTTCCTTC 1061
Query 1060 AAGATACCAATGTTCCTCCTCAGATGCTTCCTCCAATGGAAGAACACGAAGACGACATCA 1119
|||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1062 AAGATAACAATGTTCCTCCTCAGATGCTTCCTCCAATGGAAGAGCATGAAGACGACATCA 1121
Query 1120 AATGGCCCAACGGTTTGTCGTTGTTCAATGCGTTGACTGGCCGTGCAGATGAAGCTAGTA 1179
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1122 AATGGCCTAATGGTTTGTCGTTGTTCAATGCGTTGACTGGACGTGCAGATGAAGCTAGTA 1181
Query 1180 GGCTTTTGTTTAACCAGGAGCAGAACCCGATGAATGTCGAAAATCAGAACGAGTTCTTGA 1239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1182 GGCTTTTGTTTAACCAGGAGCAGAACCCGATGAATGTCGAAAACCAGAACGAGTTCTTGA 1241
Query 1240 ATCTTGAAGGTCATCATCCTAACAAGTTTAGAAGAAGCTATACATTGCCAGCTAGAATGG 1299
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1242 ACCTTGAAGGTCATCATCCTAACAAGTTTAGAAGAAGCTATACATTGCCAGCTCGAATGG 1301
Query 1300 ATTCTTCTTCATCATCTACCTCGCTTGATCAGCAACCACCACTGGAGTTTAGGAACAATA 1359
||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1302 ATTCTTCGTCATCATCAACCTCGCTTGATCAGCAACAACCACTGGAGTTTAGGAACAATA 1361
Query 1360 ACTCTGGAAGCAACTCGGGTTTGTTCCCTGACGTTATGGAGACGTTCTTGAGGTGATTGA 1419
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1362 ACTCTGGAAGCAACTCGGGTTTGTTCCCTGACGTTATGGAGACGTTTTTGAGGTGATTGA 1421
Query 1420 CATGTTCAAGATTCTGAGTT-AAGGACAGATAAAACGGAATGCTTTGGATGCTAGTTTTT 1478
|||||||||||||| | ||| |||||||||| |||| || ||| | |||||||||| ||
Sbjct 1422 CATGTTCAAGATTCAG-GTTTAAGGACAGATTAAACTAAAAGCTCTCGATGCTAGTTATT 1480
Query 1479 AGCTTTTGCTT-TCTATAAATATATGAA-CTAtgt-tt-gttgtttctt-------gttg 1527
||||| ||||| | |||||||| ||||| || | | || |||||||||| ||||
Sbjct 1481 AGCTTATGCTTGT-TATAAATACATGAAACTCTCTGTTCGTTGTTTCTTCCTTCTTGTTG 1539
Query 1528 ttgttgttgttAT-GTACCATATTGTCTGATTGTTTCTCCTTTTATGTCAAAACTCTTTT 1586
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1540 TTGTTGTTGTTATTGTACCATATTGTCTGATTGTTTCTCCTTTTATGTCAACACTCTTTT 1599
Query 1587 AACATTTGAAGATACTTTAAAAGCACATTATTGATTTGGCTTTT 1630
|||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 1600 AACATTTGAAGATACTTTAAAAACACGTTATAGATTTGGCTTTT 1643
> AT5G53895.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G27530.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:21880619-21881204 FORWARD LENGTH=485
Length=485
Score = 82.4 bits (44), Expect = 1e-14
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 1575 CAAAACTCTTTTAACATTTGAAGATACTTTAAAAGCACATTATTGATTTGGCTTTT 1630
||| |||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 485 CAACACTCTTTTAACATTTGAAGATACTTTAAAAACACGTTATAGATTTGGCTTTT 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80521674180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5