BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495482
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54060.1 | Symbols: UF3GT | UDP-glucose:flavonoid 3-o-glucos... 2237 0.0
AT5G54045.1 | Symbols: | pseudogene of UF3GT | chr5:21932253-2... 206 7e-52
> AT5G54060.1 | Symbols: UF3GT | UDP-glucose:flavonoid 3-o-glucosyltransferase
| chr5:21936879-21938369 REVERSE LENGTH=1491
Length=1491
Score = 2237 bits (1211), Expect = 0.0
Identities = 1362/1436 (95%), Gaps = 6/1436 (0%)
Strand=Plus/Plus
Query 19 CCaaaaaaaTGGGTGATTTTGGATCAAACGGTTCCTCAAGCATGAGCATTGTTATGTATC 78
|||| |||||||||| ||||||||| || | || ||||||||||| ||||| |||||||
Sbjct 54 CCAAGAAAATGGGTGTTTTTGGATCGAATGAATCGTCAAGCATGAGTATTGTGATGTATC 113
Query 79 CGTGGTTAGCCTTTGGTCACATGACTCCTTTTCTTCACCTATCAAACAAGCTCGCAGAGA 138
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 114 CGTGGTTAGCCTTTGGTCACATGACTCCTTTTCTTCACCTATCCAACAAGCTCGCAGAGA 173
Query 139 AAGGTCACAAGATTGTTTTCTTGCTTCCCAAGAAAGCACTAAACCAGCTTGAACCTCTTA 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 AAGGTCACAAGATTGTTTTCTTGCTTCCCAAGAAAGCACTAAACCAGCTTGAACCTCTTA 233
Query 199 ATCTCTACCCAAATCTCATCACTTTCCACACCATCTCAATCCCTCAGGTCAAAGGGCTCC 258
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 234 ATCTCTACCCAAATCTCATCACTTTCCACACCATCTCTATCCCTCAGGTCAAAGGGCTCC 293
Query 259 CTCCCGGTGCAGAAACAAACTCTGACGTCCCCTTCTTCTTGACTCATTTACTTGCAGTTG 318
|||| ||||| || |||||||| |||||||| ||||||||||| ||||| ||||||||||
Sbjct 294 CTCCGGGTGCGGAGACAAACTCCGACGTCCCTTTCTTCTTGACACATTTGCTTGCAGTTG 353
Query 319 CAATGGACCAAACCCGGCCAGAGGTCGAGACCATTTTCCGTACAATCAAACCGGACTTGA 378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CAATGGACCAAACCCGGCCAGAGGTCGAGACCATTTTCCGTACAATCAAACCGGACTTGG 413
Query 379 TTTTCTATGATTCTGCCCATTGGATACCGGAAATTGCTAAACCGGTAGGTGCTAAAACCG 438
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 414 TTTTCTATGATTCTGCCCATTGGATACCGGAAATTGCTAAACCGATCGGTGCTAAAACCG 473
Query 439 TTTGCTTCAACATTGTGAGCGCTGCGTCAATCGCACTGTCTCTTGTCCCTGCAGCCGAGC 498
||||||||||||| || ||||||||||||||||||||||||||||||||| | || |||
Sbjct 474 TTTGCTTCAACATCGTTAGCGCTGCGTCAATCGCACTGTCTCTTGTCCCTTCTGCGGAGA 533
Query 499 GAGAGGTCATTGATGGGAAGGAAATGTCAGGGGAGGAGTTAGCTAAGACGCCTCTAGGTT 558
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAGAGGTCATTGATGGCAAGGAAATGTCAGGGGAGGAGTTAGCTAAGACGCCTCTAGGTT 593
Query 559 ACCCGTCTTCGAAAGTAGTCTTGCGTGCGCACGAAGCAAAAGCCCTAAACTTCGTGTGGA 618
|||| ||||||||||||||||| ||| |||||||||||||| |||| | ||||||||||
Sbjct 594 ACCCATCTTCGAAAGTAGTCTTACGTCCGCACGAAGCAAAATCCCTGAGTTTCGTGTGGA 653
Query 619 GGAAGCACGAGG-GTATTG-CTTCTTTCTTTGACGGGAAAGTTACCGCGATGAGAAACTG 676
|||||||||||| | |||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 654 GGAAGCACGAGGCG-ATTGGCT-CTTTCTTTGATGGGAAAGTTACCGCGATGAGAAACTG 711
Query 677 TGACGCAATCGCTATAAGGACTTGCCGTGAGACAGAAGGCAAATTCTGCGATTACATCAG 736
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 712 CGACGCAATCGCTATAAGGACTTGCCGTGAGACAGAAGGCAAATTCTGCGATTACATAAG 771
Query 737 TAGCCAGTACAGCAAACCGGTTTACCTAACCGGACCGGTTCTCCCTGGATCCCAACCTAA 796
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 772 TAGGCAGTACAGTAAACCGGTTTACCTAACAGGACCGGTTCTCCCTGGATCCCAACCTAA 831
Query 797 TCAGCCCTCCTTAGAGCCTCAATGGGCAGAGTGGCTAGCCAAATTCAACCCCGGTTCGGT 856
||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 832 TCAGCCCTCCTTAGATCCTCAATGGGCGGAGTGGCTAGCCAAATTCAACCACGGTTCGGT 891
Query 857 TGTGTTCTGTGCTTTCGGTAGCCAACCCGTTGTAGACAAGTTAGATCAGTTTCAAGAACT 916
||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 892 TGTGTTCTGCGCTTTCGGTAGCCAACCCGTTGTAAACAAGATAGATCAGTTTCAAGAACT 951
Query 917 CTGTTTAGGGCTAGAGTCAACCGGTTTCCCGTTTCTGGTTGCGATTAAGCCTCCTTCGGG 976
||||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 952 CTGTTTAGGTCTAGAATCAACTGGTTTTCCGTTTCTGGTTGCCATTAAGCCTCCTTCGGG 1011
Query 977 TGTATCAACCGTCGAGGAAGCGTTACCGGAAGGATTCAAAGAGAGGGTTCAAGGACGTGG 1036
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TGTATCAACCGTCGAGGAAGCCTTACCGGAAGGATTCAAAGAGAGGGTTCAAGGACGTGG 1071
Query 1037 CGTTGTGTACGGAGGTTGGATTCAGCAACCGTTGGTGTTGAACCATCCTTCAGTGGGTTG 1096
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 CGTTGTGTTTGGAGGTTGGATTCAGCAACCGTTGGTGTTGAACCATCCTTCAGTGGGTTG 1131
Query 1097 TTTTGTTAGCCATTGCGGGTTTGGGTCAATGTGGGAGTCTTTGATGAGTGATTGTCAGAT 1156
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1132 TTTTGTTAGCCATTGCGGGTTTGGGTCGATGTGGGAGTCGTTGATGAGTGATTGTCAGAT 1191
Query 1157 TGTTTTGGTTCCGCAGCACGGAGAACAGATTTTGAACGCGAGGCTGATGACGGAGGAGAT 1216
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1192 CGTTTTGGTTCCGCAGCACGGAGAACAGATTTTGAACGCAAGGCTGATGACGGAGGAGAT 1251
Query 1217 GGAGGTGGCGGTTGAAGTGGAGAGGGAAGAGAATGGGTGGTTCTCGCGGCGGAGCTTGGA 1276
|||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||
Sbjct 1252 GGAGGTGGCGGTTGAAGTGGAGAGGGAAAAGAAAGGGTGGTTCTCGCGGCAAAGCTTGGA 1311
Query 1277 GAATGCGGTGAAGAGTGTGATGGAGGAAGGTAGTGAGGTCGGTGAGAAAGTGAGGAAGAA 1336
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1312 GAATGCTGTGAAGAGTGTGATGGAGGAAGGTAGTGAGATCGGTGAGAAAGTGAGGAAGAA 1371
Query 1337 TCATGACAAGTGGAGATGTGTTTTGACTGACTCTGGTTTTTCAGATGGTTATATCGATAA 1396
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1372 TCATGACAAGTGGAGATGTGTTTTGACTGACTCTGGTTTTTCAGATGGTTATATTGATAA 1431
Query 1397 GTTTGAA-AAGAATTTAATTAAACTTGTGAAGTCATGAGTTCATTTTAATGATTTC 1451
||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1432 GTTTGAACAA-AATTTAATTGAACTTGTGAAGTCATGAGTTCATTTTAATAATTTC 1486
> AT5G54045.1 | Symbols: | pseudogene of UF3GT | chr5:21932253-21933067
REVERSE LENGTH=528
Length=528
Score = 206 bits (111), Expect = 7e-52
Identities = 126/133 (95%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 1188 TTGAACGCGAGGCTGATGACGGAGGAGATGGAGGTGGCGGTTGAAGTGGAGAGGGAAGAG 1247
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 394 TTGAACGCGAGGCTGATGACGGAGGAGATGGAGGTGGCGATTGAAGTGGAGAGGCAAGAG 453
Query 1248 AATGGGTGGTTCTCGCGGCGGAGCTTGGAGAAT-GCGGTGAAGAGTGTGATGGAGGAAGG 1306
|||||||||||||||||| |||||||||||| | || || ||||||||||||||||||||
Sbjct 454 AATGGGTGGTTCTCGCGGTGGAGCTTGGAGA-TCGCAGTAAAGAGTGTGATGGAGGAAGG 512
Query 1307 TAGTGAGGTCGGT 1319
|||||||||||||
Sbjct 513 TAGTGAGGTCGGT 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71786779350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5