BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495490
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54110.1 | Symbols: ATMAMI, MAMI | membrane-associated manni... 1605 0.0
> AT5G54110.1 | Symbols: ATMAMI, MAMI | membrane-associated mannitol-induced
| chr5:21958214-21960601 FORWARD LENGTH=1177
Length=1177
Score = 1605 bits (869), Expect = 0.0
Identities = 1083/1179 (92%), Gaps = 43/1179 (4%)
Strand=Plus/Plus
Query 1 CAAAAGAAAACGCCATTTTTTGTCGATTCTTCGTCGTCCTTCTTTGAAATTCACACCAAT 60
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 CAAAACAAAACGCCATTTTTTGTCGATTCTTCGTCGTCCTCCTTTGAAATTCACACCAAT 60
Query 61 TTGTCTCTCTTCCTAGAGAAAC-AAAGATTATTCGAAACTCGTGAAAGTTTCTTCTCCGG 119
|||||||||||||||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct 61 TTGTCTCTCTTCCTAGAGAAACAAAAGATTATTCGAAACTCGGGAAAGTATC--ATCCGG 118
Query 120 TCACCGGAAAATTGATTATTTCTGATGGCGACCGGTGA---TCAAAATCCGAGTGTGGAT 176
|||||||||||||||||||||| |||| | | ||||| ||| |||||||||||||
Sbjct 119 TCACCGGAAAATTGATTATTTCCGATGCCAATAGGTGACCGTCAGAATCCGAGTGTGG-- 176
Query 177 AAGAAGAAGAAGAATCTCTTCAGGCTATGTCCGTTTTGGCAGAGGAGAAGAAGCACTACT 236
||||||||||||| |||||||||||||||||||||||||||| | | |||||||| |||
Sbjct 177 -AGAAGAAGAAGAACCTCTTCAGGCTATGTCCGTTTTGGCAGA-G-G-AGAAGCACCACT 232
Query 237 TCTTCATCTTCGTCTTCAACACAGAATCCAAGCCAAAACTACCGTAGCCGCCATGGACAT 296
|||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 233 TCTTCA------TCTTCAACACAGAATCCAAACCAAAACTACCGTAGCCGCCATGGAAAT 286
Query 297 CGGAATACAGATATTTCCGCCGTCTCTAAGCCTTCC-TTGACTATGTCTTCCGTTGCGAG 355
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || ||
Sbjct 287 CGGAATACAGATATTTCCGCCGTCTCTAAGCC-TCCGTTGACTATGTCTTCCGTCGCCAG 345
Query 356 ATCACTTCTTCCAGCTCGCCGTCGTCTCCGACTAGATCCTTCAAGTTATCTGTATTTCCC 415
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 346 ATCACTTCTTCCAGCTCGCCGTCGTCTCCGACTAGATCCTTCTAGTTATCTGTATTTCCC 405
Query 416 TTATGAACCTGGTAAACAAGTGCGTAGCGCAATCAAGCTTAAGAATACTAGCAAATCTCA 475
|||||||||||| |||||||| || |||||||| ||||||||||| ||||||||||||||
Sbjct 406 TTATGAACCTGGAAAACAAGTTCGCAGCGCAATAAAGCTTAAGAACACTAGCAAATCTCA 465
Query 476 TACTGCATTCAAGTTCCAAACAACGGCACCTAAAAGTTGTTATATGCGTCCTCCCGGTGG 535
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 466 TACTGCATTTAAGTTCCAAACAACGGCACCTAAGAGTTGTTATATGCGTCCTCCCGGAGG 525
Query 536 TGTTTTGGCTCCCGGAGAGAGTGTTTTTGCTACTGTTTTCAAGTTTGTGGAACATCCAGA 595
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 526 TGTTTTGGCTCCAGGAGAGAGTGTTTTTGCTACTGTGTTCAAGTTTGTGGAACATCCAGA 585
Query 596 GAACAATGAAAAACAGAAGTTGAACCAGAAGAGCAAGGTTAAGTTTAAGATTATGAGCCT 655
|||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 586 GAACAATGAAAAGCAGCCGTTGAATCAGAAGAGCAAGGTTAAGTTTAAGATTATGAGCCT 645
Query 656 GAAAGTTAAACCAGGAGTAGAGTATGTGCCTGAGTTGTTTGATGAGCAAAAGGATCAAGT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GAAAGTTAAACCAGGAGTAGAGTATGTGCCTGAGTTGTTTGATGAGCAAAAGGATCAAGT 705
Query 716 AGCAGTGGAGCAGGTTCTTCGGGTCATTTTTATTGATGCGGACCGCCCGAGTGCTGCATT 775
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 706 AGCAGTGGAGCAGGTTCTTCGGGTCATTTTTATTGATGCGGACCGCCCAAGTGCTGCATT 765
Query 776 GGAGAAACTAAAACGTCAATTGGATGAAGCTGAAGCTGCAGTTGAAGCAAGAAAGAAGCC 835
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GGAGAAACTGAAACGTCAATTGGATGAAGCTGAAGCTGCAGTTGAAGCAAGAAAGAAGCC 825
Query 836 TCCCCCAGAGACAGGGCCTCGAGTGGTCGGGGAGGGTCTTGTCATAGACGAATGGAAGGA 895
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 826 TCCCCCAGAGACAGGGCCTCGAGTTGTCGGGGAGGGTCTTGTCATAGACGAATGGAAGGA 885
Query 896 GAGAAGAGAGAAGTACCTTGCTCGGCAACAAGTCGAAGCTATAGATTCTTCGTCCTAAAA 955
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 886 GAGAAGAGAGAAGTACCTTGCTCGGCAACAAGTCGAATCCGTAGATTCTTTGTCCTAAA- 944
Query 956 CGCAGAGAGCAATGTGGATTTGTTATAAGCTTATAGCTGAGGTGATGTACATAATTTATT 1015
|||||||||||||||||| ||||| | || | | | | ||||||||||||||||
Sbjct 945 CGCAGAGAGCAATGTGGACTTGTTCT--GC--A--G---A--TCATGTACATAATTTATT 993
Query 1016 ATCTCTCGATTAT--------CTCTAGACGATTTGTACTTTGTTGTTTTTGTATGTCTCT 1067
||| ||||||||| |||||||||||| ||||||| ||| ||||||||||||
Sbjct 994 ATCCCTCGATTATGTATTTATCTCTAGACGATT---ACTTTGTGGTTCTTGTATGTCTCT 1050
Query 1068 GTTTGTTGTGTGATTCACGCTGGTTTGTTCTCCTTCATCAAAATTTGTTTCGGTCGTTTG 1127
||||||||||||||||| || ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1051 GTTTGTTGTGTGATTCATGCCGGTTTTTTCTCCTTCATCAAATTTTGTTTCGGTCGTTTT 1110
Query 1128 TAGTTGATCTAGAATGGAACCAAAATTTGTTCAGTATTT 1166
||||||||||||||| |||||| | ||||||||||||||
Sbjct 1111 TAGTTGATCTAGAATCGAACCAGAGTTTGTTCAGTATTT 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57228621300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5