BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495497
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54160.1 | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 | c... 1999 0.0
> AT5G54160.1 | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 |
chr5:21981996-21984363 FORWARD LENGTH=1367
Length=1367
Score = 1999 bits (1082), Expect = 0.0
Identities = 1252/1329 (94%), Gaps = 31/1329 (2%)
Strand=Plus/Plus
Query 1 CACCCATCACACAATCCTCAAAACAGAGTAACCCAAAAAACAGAGCAATCTCTaaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 CACCCATCACACAATCCTCAAAACAGAGTAACCCAAAAAACAGAGCAATCTCT-AAAAAA 59
Query 61 GTCTCAAGAAACCTCACTAAAATGGGTTCAACGGCGGAGACACAATTAACCCCGGTGCAA 120
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 60 -TCTCAAGAAACCTCACTAAAATGGGTTCAACGGCAGAGACACAATTAACTCCGGTGCAA 118
Query 121 GTCACCGACGAAGAAGCTGCCCTCTTCGCCATGCAACTAGCCAGTGCCTCCGTTCTTCCG 180
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 119 GTCACCGACGACGAAGCTGCCCTCTTCGCCATGCAACTAGCCAGTGCTTCCGTTCTTCCG 178
Query 181 ATGGCTTTAAAATCGGCTTTAGAGCTCGACCTTCTTGAGATCATGGCCAAGAACGGTTCT 240
|||||||||||||| || |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 179 ATGGCTTTAAAATCCGCCTTAGAGCTTGACCTTCTTGAGATTATGGCCAAGAATGGTTCT 238
Query 241 CCCATGTCTCCGACCGAGATCGCTTCTCATCTTCCGACCAAAAACCCTGAAGCTCCGGTC 300
||||||||||| ||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 239 CCCATGTCTCCTACCGAGATCGCTTCTAAACTTCCGACCAAAAATCCTGAAGCTCCGGTC 298
Query 301 ATGCTCGACCGTATCCTCCGTCTTCTTACGTCTTACTCCGTTC-TCACCTGCTCCAACCG 359
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 299 ATGCTCGACCGTATCCTCCGTCTTCTTACGTCTTACTCCG-TCTTAACCTGCTCCAACCG 357
Query 360 TAAACTTTCCGGTGACGGCGTTGAACGGATTTACGGGCTTGGTCCGGTTTGCAAGTATTT 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TAAACTTTCCGGTGATGGCGTTGAACGGATTTACGGGCTTGGTCCGGTTTGCAAGTATTT 417
Query 420 GACCAAGAACGAAGATGGTGTTTCCATTGCTGCTCTTTGTCTTATGAACCAAGACAAGGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GACCAAGAACGAAGATGGTGTTTCCATTGCTGCTCTTTGTCTTATGAACCAAGACAAGGT 477
Query 480 TCTCATGGAAAGCTGGTACCATTTGAAGGATGCAATTCTTGATGGTGGGATTCCATTCAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCTCATGGAAAGCTGGTACCATTTGAAGGATGCAATTCTTGATGGTGGGATTCCATTCAA 537
Query 540 CAAGGCTTATGGAATGAGCGCGTTTGAGTACCACGGAACTGACCCTAGATTCAACAAGGT 599
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 538 CAAGGCTTATGGAATGAGCGCGTTCGAGTACCACGGGACTGACCCTAGATTCAACAAGGT 597
Query 600 CTTTAACAATGGAATGTCTAACCATTCCACAATCACCATGAAGAAGATTCTTGAGACCTA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTTTAACAATGGAATGTCTAACCATTCCACAATCACCATGAAGAAGATTCTTGAGACCTA 657
Query 660 CAAGGGTTTCGAGGGCTTGACTTCTTTGGTTGATGTTGGTGGTGGCATTGGTGCTACTCT 719
|||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 TAAGGGTTTTGAAGGATTGACTTCTTTGGTTGATGTTGGTGGTGGCATTGGTGCTACACT 717
Query 720 TAAAATGATTGTCTCCAAGTACCCTAACCTTAAAGGCATCAACTTTGATCTCCCACATGT 779
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 718 CAAAATGATTGTCTCCAAGTACCCTAATCTTAAAGGCATCAACTTTGATCTCCCACATGT 777
Query 780 CATCGAAGATGCTCCTTCTCATCCCGGTATTGAGCATGTTGGAGGAGATATGTTCGTAAG 839
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 778 CATCGAAGATGCTCCTTCTCATCCTGGTATTGAGCATGTTGGAGGAGATATGTTTGTAAG 837
Query 840 TGTCCCTAAAGGTGATGCCATATTCATGAAGTGGATATGTCATGACTGGAGCGACGAACA 899
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 838 TGTCCCTAAAGGTGATGCCATATTCATGAAGTGGATATGTCATGACTGGAGTGACGAACA 897
Query 900 TTGCGTGAAATTCTTGAAGAACTGCTACGAGGCGCTTCCAGAGGATGGAAAAGTGATATT 959
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 898 TTGCGTGAAATTCTTGAAGAACTGCTACGAGTCACTTCCAGAGGATGGAAAAGTGATATT 957
Query 960 AGCAGAATGTATACTTCCAGAGACACCAGACTCAAGCCTCTCAACCAAACAAGTAGTCCA 1019
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGCAGAGTGTATACTTCCAGAGACACCAGACTCAAGCCTCTCAACCAAACAAGTAGTCCA 1017
Query 1020 TGTCGATTGCATTATGTTGGCTCACAATCCCGGAGGCAAAGAACGAACCGAGAAAGAATT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1018 TGTCGATTGCATTATGTTGGCTCACAATCCCGGAGGCAAAGAACGAACCGAGAAAGAGTT 1077
Query 1080 CGAGGCATTAGCCAAAGCATCAGGCTTCAAGGGCATCAAAGTTGTCTGCGACGCTTTTGG 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGAGGCATTAGCCAAAGCATCAGGCTTCAAGGGCATCAAAGTTGTCTGCGACGCTTTTGG 1137
Query 1140 TGTTAACCTTATTGAGTTGCTCAAGAAGCTCTAAAA--------T-TT---AT-A---TG 1183
|||||||||||||||||| ||||||||||||||||| | || || | ||
Sbjct 1138 TGTTAACCTTATTGAGTTACTCAAGAAGCTCTAAAAACAAACAATGTTCCTATGAAGATG 1197
Query 1184 -T--A-A---A--CATTATCTCATATCTACTTGGACGGTTTTAAAACTATCCTGTTTAAT 1234
| | | | ||||||||||||||| ||| |||||| |||||||| |||||||||
Sbjct 1198 ATTTATATGTAAACATTATCTCATATCTCCTTCCACGGTTCCAAAACTATGCTGTTTAAT 1257
Query 1235 AATGGATCTTATAAGAATTTCGTTTA-GAGTTTGTGTTTTTGTTTGTTTGTAACAAAATT 1293
||||| | ||| |||||||| | ||| |||||||| |||||||||||||| |||||||||
Sbjct 1258 AATGGTTTTTACAAGAATTT-GATTATGAGTTTGTATTTTTGTTTGTTTGGAACAAAATT 1316
Query 1294 ATGTAATTA 1302
|||| ||||
Sbjct 1317 ATGTGATTA 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5