BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495514 Length=1181 Score E Sequences producing significant alignments: (Bits) Value AT5G54290.2 | Symbols: CcdA | cytochrome c biogenesis protein f... 1650 0.0 > AT5G54290.2 | Symbols: CcdA | cytochrome c biogenesis protein family | chr5:22051034-22053974 FORWARD LENGTH=1182 Length=1182 Score = 1650 bits (893), Expect = 0.0 Identities = 1089/1179 (92%), Gaps = 32/1179 (3%) Strand=Plus/Plus Query 1 AAGACTGTGAAGCGAGAGAACCGTT-AGACGACGGACACTTATCT----GGAGAGCCATG 55 |||||||||||||||||| |||||| ||||||||||| ||||||| |||||| |||| Sbjct 7 AAGACTGTGAAGCGAGAGGACCGTTAAGACGACGGACGCTTATCTGGAAGGAGAGTCATG 66 Query 56 AATCTAAGTGTGAACCGATGCATCA----------C--CGGTGGATTCTCGAGCTGCAGA 103 ||||| ||||||||||||||||||| | |||||||||||| ||||||||| Sbjct 67 AATCTGAGTGTGAACCGATGCATCACCGGTGGTTTCGTCGGTGGATTCTCTAGCTGCAGA 126 Query 104 CTCAATCA-AG--AGAAAAGATGGGTTCGTGCTGCCAAGAATTGTGAGC-TGCAGAGAGA 159 |||||||| | ||||||| ||||||||||||| |||| | ||||||| || |||| || Sbjct 127 CTCAATCATGGTAAGAAAAGGTGGGTTCGTGCTGGCAAGCACTGTGAGCTTG-AGAGGGA 185 Query 160 GACAAGTTTAGTGTCTGATGTTGTTTGTTTTCAGAGGAAAGAGAGCAAAAGTATGAAACT 219 || ||||||||||||||||| ||||| ||| ||||| |||||||||||| || ||||| Sbjct 186 GAGAAGTTTAGTGTCTGATGCTGTTTCTTTAGAGAGGTTAGAGAGCAAAAGCATTAAACT 245 Query 220 TGTGATGCTTGCTAGTGGTTTAGGAGTGGCAAACTTGGTAACTCTTAGCTCAGCAAAGGC 279 || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 246 TGCGATGCTTGCTAGTGGTTTAGGAGTGGCGAACTTGGTAACTCTTAGCTCAGCAAAAGC 305 Query 280 CGCAGACTTGAAGATGATTGTCTTGGATCAAGCCACTTCCCTTTACATTTTGGCTGAAGG 339 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 306 CGCAGACTTGAAGATGATTGTCTTGGATCAAGCCACTTCCATTTACATCTTGGCTGAAGG 365 Query 340 AAGCCTTGGTGATTCGGTCGGGAACTTCTTGTATTCAGCTAACCAACAGGCTAACGAAGC 399 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 366 AAGCCTTGGAGATTCGGTCGGGAACTTCTTGTATTCAGCTAACCAACAGGCTAACGAAGC 425 Query 400 TGTTCAGGATCAGCTTTCAGCTCTCAGTGTAACAAGTTTGGCAGTAATATTTGGGGCAGG 459 |||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 426 TGTTCAAGATCAACTATCAGCACTCAGTGTAACAAGTTTGGCAGTAATATTTGGGGCAGG 485 Query 460 CCTTGTGACAAGTTTGTCTCCATGTACACTAAGTGTTCTGCCTTTGACACTTGGCTATAT 519 ||||||||||||| |||||||||||||||| |||||| |||| ||||||||||| ||||| Sbjct 486 CCTTGTGACAAGTCTGTCTCCATGTACACTTAGTGTTTTGCCGTTGACACTTGGTTATAT 545 Query 520 TGGTGCATTTGGGTCTGGCAAAAGCAGAGGGCAGGTTATTGGAGATACAGTTGCTTTCGC 579 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 546 TGGTGCATTTGGGTCTGGCAAAAGCAGAGGTCAGGTTATTGGAGATACAGTTGCTTTCGC 605 Query 580 ACTGGGATTAGCAACTACCTTAGCACTTCTTGGTATAGTAGCCTCTTTTGCCGGAAAAGC 639 |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct 606 ACTGGGATTAGCAACTACCTTAGCCCTTCTTGGGATAGTAGCTTCTTTTGCCGGAAAAGC 665 Query 640 CTATGGACAAATAGGACAAGGGTTACCAGTAGCTGCATCCGGTCTGGCTATTGTAATGGG 699 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 666 CTATGGACAAATAGGACAAGGATTACCAGTAGCTGCATCCGGTCTGGCTATTGTAATGGG 725 Query 700 TTTTAATCTCCTTGAGATAATCGAACTTCAGCTTCCATCTTTCTTTAACAACTTTGATCC 759 | | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 726 TCTCAATCTCCTTGAGATAATCGAACTTCAGCTTCCTTCTTTCTTTAACAACTTTGATCC 785 Query 760 TCGTGCTGCAGCAGCAAACTTCCCATCTAGTGTACAAGCGTATCTAGCCGGTCTCACATT 819 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 786 TCGTGCTGCAGCAGCAAACTTCCCATCTAGTGTACAAGCATATCTAGCCGGTCTCACATT 845 Query 820 CGCACTAGCTGCCTCACCTTGTAGTACTCCAGTTCTAGCCACCCTTCTTGGCTACGTGGC 879 |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 846 CGCACTTGCTGCCTCACCTTGTAGTACTCCAGTTCTAGCCACTCTTCTTGGTTACGTGGC 905 Query 880 TACTTCCAGGGATCCAGTAATTGGTGGTAGCTTACTCTTAACCTATACAACAGGTTACGT 939 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 906 TACTTCCAGGGATCCAGTAATTGGTGGAAGCTTACTCTTAACCTATACAACAGGTTACGT 965 Query 940 TGCTCCACTCATCGTGGCTGCTTCTTTCGCCGGAGCTTTACAGAGCTTACTTTCCTTGCG 999 |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 966 CGCTCCACTTATCGTCGCTGCTTCTTTTGCCGGAGCTTTACAGAGCTTACTTTCGTTGCG 1025 Query 1000 AAAGGTCTCTGCATGGATCAACCCCATAAGTGGTGCTCTTCTACTTGGAGGAGGTTTATA 1059 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1026 AAAGGTCTCTGCATGGATCAATCCCATAAGTGGTGCTCTTCTACTTGGAGGAGGTTTATA 1085 Query 1060 TACTTTCTTGGATAGGCTTTTTCCTGCTGCAACTATGGTCATGTAAAAA---A-CT-ACA 1114 |||||||||||||||||||||||||||||| |||||||||||||||||| | || ||| Sbjct 1086 TACTTTCTTGGATAGGCTTTTTCCTGCTGCTACTATGGTCATGTAAAAACTTAACTTACA 1145 Query 1115 TTACTCATTTCTGCCaaaaaaaacaaaaaTGTTTGTAAT 1153 ||||||||| |||||||| |||| |||||||||| Sbjct 1146 A-ACTCATTTCGGCCAAAAA---CAAAG-TGTTTGTAAT 1179 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57981629475 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5