BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495538 Length=607 Score E Sequences producing significant alignments: (Bits) Value AT5G54585.1 | Symbols: | unknown protein; Has 30201 Blast hits... 743 0.0 > AT5G54585.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22175539-22176691 FORWARD LENGTH=730 Length=730 Score = 743 bits (402), Expect = 0.0 Identities = 504/552 (91%), Gaps = 11/552 (2%) Strand=Plus/Plus Query 6 ATAAAAGGAAGAGAAGTGATCAGGTGTGGTAACGTGTAGGATATGAAATACTTGTTGGAG 65 |||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| Sbjct 108 ATAAAAGGAAGAGAAGTGATCAGGTGTGGTGACGAGTAGGATATGAAATTCTTGTTGGAA 167 Query 66 CTCGTCGTGCCTTGTTTTGGTTCGCAACAGTTCCAAGAATCCGCCGC-A--ACCGCAGAA 122 ||||||||||||||||||||||| ||||||||||||||||||||||| | || || || Sbjct 168 CTCGTCGTGCCTTGTTTTGGTTCACAACAGTTCCAAGAATCCGCCGCAAGTACTGCGGAT 227 Query 123 GATTCGGTTTCAGACGAAACGCAAACGCTAATGAAACAGCGGAGGCGACGGAAACGCGTT 182 ||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct 228 GATTCGGTTTCTGACGAAACACAAACGCTGATGAAACAACGGAGGCGACGGAAACGCGTT 287 Query 183 AGAGTGGCTGGTCAACCTGGACAAGTGGCAGAGTGGAGACCGTCACTTAGCGTTATCTCT 242 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 288 AGAGTGGCTGGTCAACCTGGACAAGTGGCAGAGTGGAGACCGTCTCTTAGCGTTATCTCC 347 Query 243 GAGAACAAACCGGCAATAACGAAGATATCGGAAAAGGACGAAGAAAAGAAGAAAGTTCGT 302 |||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||| ||| Sbjct 348 GAGAACAAGCCGGCGATAACGAAGATATCAGAAAAGAACGAAGAAAAGAAGAAAGTCCGT 407 Query 303 CGGAAAAGTGAAGGCAACGGCGGCGGTGACGCGTCGTCGCTATCCGGCGGTGGTCATGTT 362 |||||||||||||||||||||||||| ||||| || || | ||||| ||||||||| || Sbjct 408 CGGAAAAGTGAAGGCAACGGCGGCGGAGACGCATCATCACGGTCCGGTGGTGGTCATATT 467 Query 363 CGTTTCTGTAGTGACGATTTCGGGAGAAATGCTTTTGAACCGGTGATTCCGGCATTCTCA 422 |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 468 CGTTTCCGTAGTGACGATTTCGGGAGAAATGCTTTCGAACCGGTGATTCCGGCATTCTCG 527 Query 423 CCGACTCCGTTCATGTTTTGAGTTTAAGTTTGTGGTGAAATTTATGTGtatatactatat 482 ||||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||| Sbjct 528 CCGACTCCGTTCATGTTTTGAGTTTAAGTTTCTGGTGAAGTTTATGTGTATA-A-TATAT 585 Query 483 atatattaataaatatgttaatgttaatggaaagatgtatcattaatgtatatatTTCTT 542 | || || | ||||||| |||||||||||||||||| |||||||||||||| ||||| Sbjct 586 -TG-AT-AA-A--TATGTTATTGTTAATGGAAAGATGTAGCATTAATGTATATACTTCTT 639 Query 543 TGATATTACTAC 554 |||| ||||||| Sbjct 640 TGATTTTACTAC 651 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29236273554 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5