BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495542
Length=695
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54600.1 | Symbols: | Translation protein SH3-like family p... 1153 0.0
> AT5G54600.1 | Symbols: | Translation protein SH3-like family
protein | chr5:22182978-22184567 FORWARD LENGTH=829
Length=829
Score = 1153 bits (624), Expect = 0.0
Identities = 671/694 (97%), Gaps = 2/694 (0%)
Strand=Plus/Plus
Query 1 AAAAAATGGCAACCATGTCTGCTCTTCAGAGCTCTTTTACTTCTCTTTCTCTATCCT-CC 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 64 AAAAAATGGCAACCATGTCTGCTCTTCAGAGCTCTTTTACTTCTCTTTCTCTAT-CTCCC 122
Query 60 AACTCTTCTTTCCTCGGCCAGCGTTTAATTTCTCCGATTTCCTTCTCCGTCACTTCTCCG 119
| |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 123 AGCTCTTCCTTCCTCGGCCAGCGTTTAATTTCCCCGATTTCCCTCTCCGTCACTTCTCCG 182
Query 120 GTCAAGCCCGCCGAGAACCCATGTCTTGTTCTTGCAAAGCTCAAGCGTTGGGAACGAAAA 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GTCAAGCCCGCTGAGAACCCATGTCTTGTTCTTGCAAAGCTCAAGCGTTGGGAACGAAAA 242
Query 180 GAATGCAAACCAAACAGCCTTCCGATTCTGCACAAAATGCATGTCAAGTTTGGAGATACG 239
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 243 GAATGCAAACCAAACAGTCTTCCGATTCTCCACAAAATGCATGTCAAGTTTGGAGATACA 302
Query 240 GTCAAAGTTATATCTGGACGCGACAAGGGTAAAATCGGAGAGGTCACTAAGATCTTCACT 299
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 303 GTCAAAGTAATATCTGGACGCGACAAGGGTAAAATCGGAGAGGTTACTAAGATTTTCACT 362
Query 300 CACAACAGTACCATTGTGATCAAAGATGTTAACCTCAAAACAAAACACATGAAGAGCAGA 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 363 CACAACAGTACCATTGTGATCAAAGATGTGAACCTCAAAACAAAACACATGAAGAGCCGA 422
Query 360 GAAGAGGGAGAACCTGGTCAAATTGTCAAGATAGAAGCACCTATCCACAGCTCAAACGTG 419
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 423 GAAGAGGGAGAGCCTGGTCAAATTGTCAAGATAGAAGCACCTATCCACAGCTCAAATGTG 482
Query 420 ATGTTGTATTCAAAAGAAAAAGACGTAGTAAGCCGGGTGGGTCACAAGGTACTTGCGGAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 483 ATGTTGTATTCAAAAGAAAAAGACGTAGTAAGCCGGGTGGGTCACAAGGTACTTGAAGAT 542
Query 480 GGACAGAAGGTAAGATATCTGATCAAAACAGGGGAACTTATCGACACCATTGAGAAGTGG 539
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 543 GGACAGAAGGTAAGATATCTGATCAAAACAGGGGAACTCATCGACACCATTGAGAAGTGG 602
Query 540 AAGCAACTTAAGGAGGCTAAGGGTAAAGAAACCACCCAAGTTGCAGTTACCTCCGCATCT 599
|||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 603 AAGCTACTTAAGGAGGCTAAGGATAAGGAAACCACCCAAGTTGCAGTTACCTCCGCATCT 662
Query 600 TAGCGTCTCATTTCTTTCTTCTTCAGTGCACTTTTGATATAATAGACCTATGCATTGGAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TAGCGTCTCATTTCTTTCTTCTTCAGTGCACTTTTGATATAATAGACCTATGCATTGGAT 722
Query 660 GGATGTATTGAATCCCTTTTAAGGTAAATTATAA 693
||||||||||||||||||||||||||||||||||
Sbjct 723 GGATGTATTGAATCCCTTTTAAGGTAAATTATAA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33656878490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5