BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495556
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54760.1 | Symbols: | Translation initiation factor SUI1 fa... 917 0.0
AT1G26558.1 | Symbols: | other RNA | chr1:9175611-9177556 FORW... 86.1 4e-16
> AT5G54760.1 | Symbols: | Translation initiation factor SUI1
family protein | chr5:22243864-22245770 FORWARD LENGTH=763
Length=763
Score = 917 bits (496), Expect = 0.0
Identities = 604/650 (93%), Gaps = 31/650 (5%)
Strand=Plus/Plus
Query 2 TATTTTCTCACCGTCGAGAGAACAAAACGCAAGTTGCAGACTTTATCCAAATTTAGGG-T 60
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 3 TATTTTCTCACCGTCGAGAAAACAAAACACAAGTTGCAGACTTTATCCAAATTTAGGGTT 62
Query 61 TT-TC------t-tt--tt--ttATCATCAGATCTT-AGAAACCCCAATTTTATTTGCAA 107
|| || | || || ||||||||||||||| | ||||||||| ||||||||
Sbjct 63 TTCTCTTTTTTTCTTACTTAGTTATCATCAGATCTTCA-AAACCCCAA---AATTTGCAA 118
Query 108 AACAGATCTCAGCTTCCCGGTTAGTTTTACCCTCAAATCAACTAAGTTTCATGTCTGAAC 167
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 119 ATCAGATCTCAGCTTCCCGGTTAGTACTACCCTCAAATCAACTAAGTTTCATGTCTGAAC 178
Query 168 TTGACTCCCAGGTTCCCACTGCCTTTGATCCGTTTGCTGATGCGAATGTTGAGGACTCAG 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTGACTCCCAGGTTCCCACTGCCTTTGATCCGTTTGCTGATGCGAATGTTGAGGACTCAG 238
Query 228 GTGCCGGAACAAAGGAGTACGTTCATATCCGTGTCCAGCAGCGAAATGGTAGGAAAAGCT 287
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTGCCGGAACAAAAGAATACGTTCATATCCGTGTCCAGCAGCGAAATGGTAGGAAAAGCT 298
Query 288 TGACAACCGTCCAGGGCCTGAAGAAAGAGTACAGCTATACCAAGATACTTAAAGACCTCA 347
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 299 TGACAACCGTCCAGGGCCTGAAGAAAGAGTACAGCTATACCAAGATACTTAAGGACCTCA 358
Query 348 AGAAAGAGTTTTGCTGCAACGGCACTGTGGTTCAGGATTCAGAACTTGGACAGGTCATAC 407
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 359 AGAAAGAGTTTTGCTGCAACGGCACTGTGGTTCAGGATTCAGAACTCGGACAGGTTATAC 418
Query 408 AGCTTCAAGGTGACCAGCGTAAGAACGTCTCCACATTCCTTGTTCAGGCTGGTTTGGTGA 467
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 AGCTTCAAGGTGACCAACGTAAGAACGTCTCCACATTCCTTGTCCAGGCTGGTTTGGTGA 478
Query 468 AGAAGGATAACATCAAGATCCATGGTTTCTAAGCTATCTAGTGGATCATATTAATAATAA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 AGAAGGATAACATCAAGATCCATGGTTTCTAAGCTATCTAGTGGATCATATTATTAATAA 538
Query 528 AACCATATCATTCTCTTCTTTCATCTCTTGTTGCGAATTTCGGGTTTGATTCGAGTAGAC 587
||||||||| || | ||||||||||||||||||||||||||||||||||||| | | |
Sbjct 539 AACCATATC-TT-T-TTCTTTCATCTCTTGTTGCGAATTTCGGGTTTGATTC-A-T---C 590
Query 588 GATCAGAATCGTCTGCTTCCTAGTGTTCTTCATTCTGTTTGGTATTCGAA 637
| | |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 591 -A--A-AATCGTCTTCTTCCTAGTGTTCTTC-TTCTGTTTGGTATTCGAA 635
> AT1G26558.1 | Symbols: | other RNA | chr1:9175611-9177556 FORWARD
LENGTH=483
Length=483
Score = 86.1 bits (46), Expect = 4e-16
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 356 TTTTGCTGCAACGGCACTGTGGTTCAGGATTCAGAACTTGGACAGG 401
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTTTGCTGCAACGGCACTGTGGTTCAGGATTCAGAACTTGGACAGG 223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30743297964
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5