BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495579
Length=1997
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54960.1 | Symbols: PDC2 | pyruvate decarboxylase-2 | chr5:2... 3155 0.0
> AT5G54960.1 | Symbols: PDC2 | pyruvate decarboxylase-2 | chr5:22310687-22312761
REVERSE LENGTH=2075
Length=2075
Score = 3155 bits (1708), Expect = 0.0
Identities = 1906/2002 (95%), Gaps = 11/2002 (1%)
Strand=Plus/Plus
Query 1 TATGGACACTAAGATCGGATCCATCGACGCGTGTAACCCGACCCACGACGATATCGGCGG 60
||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||
Sbjct 80 TATGGACACTAAGATCGGATCTATCGACGCGTGTAACCCGACCAACCACGATATCGGCGG 139
Query 61 TCCTCCAAACGGCGGCGTCTCTACCGTTCAAAACTCAAGTCCACTTCACTCCATCACAGT 120
||||||||||||||| ||||| |||||||||||| |||||||||||||||||| ||| ||
Sbjct 140 TCCTCCAAACGGCGGAGTCTCCACCGTTCAAAACACAAGTCCACTTCACTCCACCACCGT 199
Query 121 CAGCCCCTGCGACGCGACTCTTGGCCGTTACCTAGCGAGACGGTTAGTCGAAATCGGCGT 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 200 CAGCCCCTGCGACGCGACTCTTGGCCGTTACCTAGCAAGACGGTTAGTCGAAATCGGCGT 259
Query 181 CACCGATGTCTTCTCCGTTCCTGGTGATTTCAACCTAACGCTTCTCGATCACCTCATCGC 240
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 260 CACCGATGTCTTCTCCGTTCCTGGTGATTTCAACCTGACGCTTCTCGATCACCTAATCGC 319
Query 241 CGAACCAAGCCTCAAGCTGATCGGTTGCTGTAACGAGCTTAACGCCGGATACGCTGCTGA 300
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 320 CGAACCAAACCTCAAGCTGATCGGTTGCTGCAACGAGCTTAACGCCGGATACGCTGCTGA 379
Query 301 CGGTTACGCCAGATCTCGCGGCGCTGGTGCTTGCGTCGTTACGTTCACCGTCGGTGGATT 360
||||||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 380 CGGTTACGCTAGATCTCGCGGTGTTGGTGCGTGCGTCGTTACGTTCACCGTCGGTGGATT 439
Query 361 GAGTG-TCTTGAATGCGATCGCCGGTGCTTATAGTGAGAATCTGCCTTTGATTTGCATCG 419
||||| || |||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 440 GAGTGTTC-TGAATGCGATCGCCGGTGCTTACAGTGAGAATCTGCCTCTGATTTGCATCG 498
Query 420 TCGGTGGTCCAAACTCCAACGATTACGGTACCAATAGGATTCTTCATCATACGATTGGTT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 499 TCGGTGGTCCAAACTCCAACGATTACGGTACCAATAGGATTCTTCATCATACAATTGGTT 558
Query 480 TACCTGATTTCACTCAAGAGCTTAGGTGTTTTCAAGCTGTTACTTGTTATCAAGCTGTGA 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 559 TACCTGATTTCACTCAAGAGCTTAGGTGTTTTCAAGCTGTTACTTGTTTTCAAGCTGTGA 618
Query 540 TTAATAACTTGGAAGAAGCTCATGAACTCATCGATACTGCGATTTCAACTGCTTTGAAAG 599
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 619 TTAATAACTTAGAAGAGGCTCATGAACTTATCGATACTGCGATTTCAACTGCTTTGAAAG 678
Query 600 AAAGCAAACCTGTTTATATCAGTATCAGCTGTAATTTGCCGGCGATTCCTCTTCCGACTT 659
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 679 AAAGCAAACCTGTTTATATCAGTATCAGCTGTAATTTACCGGCGATTCCTCTTCCGACGT 738
Query 660 TTAGTCGTCATCCTGTTCCGTTCATGCTTACGCCGAAGGTGAGTAATCAGATGGGTATAG 719
||||||||||||||||||||||||||||| || |||||| || |||||||| ||| |||
Sbjct 739 TTAGTCGTCATCCTGTTCCGTTCATGCTTCCGATGAAGGTTAGCAATCAGATTGGTTTAG 798
Query 720 ATGCGGCGGTAGAGGCAGCTGCTGAATTCTTGAACAAAGCGGTGAAGCCAGTTCTTGTTG 779
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 799 ATGCGGCGGTGGAGGCAGCTGCTGAGTTCTTGAACAAAGCTGTGAAGCCAGTTCTTGTTG 858
Query 780 GAGGGCCGAAAATGCGGGTTGCGAAAGCCGCTGATGCTTTTGTTGAGCTTGCTGATGCTT 839
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 859 GTGGGCCGAAAATGCGGGTTGCGAAAGCCGCGGATGCTTTTGTTGAGCTTGCTGATGCTT 918
Query 840 CTGGTTATGGTCTTGCTGTGATGCCTTCTGCTAAAGGACAAGTACCTGAGCATCACAAGC 899
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CTGGCTATGGTCTTGCTGTGATGCCTTCTGCTAAAGGACAAGTACCTGAGCATCACAAGC 978
Query 900 ATTTTATAGGGACGTATTGGGGAGCTGTGAGTACAGCTTTCTGTGCTGAAATTGTTGAAT 959
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 979 ATTTTATAGGGACGTATTGGGGAGCTGTGAGTACAGCTTTTTGTGCTGAAATCGTTGAAT 1038
Query 960 CTGCGGATGCTTATTTGTTTGCAGGTCCGATTTTCAACGATTACAGTTCTGTTGGGTACT 1019
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1039 CTGCGGATGCTTATCTGTTTGCAGGTCCGATTTTCAACGATTACAGTTCTGTTGGGTATT 1098
Query 1020 CTCTGCTTCTCAAGAAGGAGAAGGCCATCATCGTGCAGCCTGATCGGGTTACTATCGGTA 1079
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1099 CTCTGCTTCTCAAGAAGGAGAAGGCAATCATCGTTCAGCCTGATCGGGTTACTATCGGTA 1158
Query 1080 ACGGACCTGCGTTTGGGTGTGTTCTTATGAAGGATTTTCTTAGCGAGTTGGCTAAACGAA 1139
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1159 ACGGACCTGCGTTTGGATGTGTTCTTATGAAGGATTTTCTAAGCGAGTTGGCTAAACGAA 1218
Query 1140 TTAAGCACAACAACACTTCTTACGAGAATTACCACAGGATCTTTGTCCCAGAAGGAAAGC 1199
|||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||
Sbjct 1219 TTAAGCACAACAACACTTCTTATGAGAATTATCACAGGATCTATGTCCCAGAAGGAAAGC 1278
Query 1200 CTTTGAGAGATAACCCAAATGAGCCTTTGAGGGTTAATGTGCTGTTCCAACACATTCAAA 1259
|||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 1279 CTTTGAGAGATAACCCGAATGAGTCTTTGAGGGTTAATGTACTGTTCCAACACATTCAGA 1338
Query 1260 ATATGCTCTCTTCTGAAACTGCTGTGCTTGCTGAGACAGGGGATTCCTGGTTCAATTGTC 1319
|||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1339 ATATGCTCTCTTCTGAGTCTGCTGTGCTTGCTGAGACAGGAGATTCCTGGTTCAACTGTC 1398
Query 1320 AGAAGCTGAAGCTCCCTGAAGGATGCGGTTACGAATTCCAAATGCAGTACGGATCAATTG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 AGAAGCTGAAGCTCCCTGAAGGATGCGGTTACGAATTCCAAATGCAGTACGGATCAATTG 1458
Query 1380 GTTGGTCAGTGGGTGCTACTCTAGGCTATGCTCAAGCCATGCCAAACAGTCGTGTCATTG 1439
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1459 GCTGGTCAGTGGGTGCTACTCTAGGCTATGCTCAAGCCATGCCAAACAGGCGTGTCATTG 1518
Query 1440 CTTGTATTGGAGATGGTAGTTTCCAGGTAACCGCGCAGGATGTATCTACGATGATACGGT 1499
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1519 CTTGTATTGGAGATGGTAGTTTCCAGGTAACCGCACAGGATGTATCTACGATGATACGGT 1578
Query 1500 GTGGGCAAAAGACCATAATCTTCCTCATCAACAACGGAGGCTACACAATTGAGGTGGAGA 1559
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1579 GTGGGCAAAAGACCATAATCTTCCTCATCAACAACGGAGGCTACACCATTGAGGTGGAAA 1638
Query 1560 TTCACGATGGTCCTTACAATGTCATAAAGAACTGGAACTACACAGCCTTTGTCGATGCCA 1619
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 1639 TTCACGATGGTCCTTACAATGTCATAAAGAACTGGAACTACACAGCTTTTGTTGAGGCCA 1698
Query 1620 TCCACAATGGAGAAGGAAAATGCTGGACTGCCAAGGTGAGATGCGAGGAGGAGCTT-GTG 1678
| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1699 TACACAATGGAGAAGGAAAATGCTGGACTGCCAAGGTGAGATGCGAGGAGGAG-TTAGTG 1757
Query 1679 AAAGCGATTAACACGGCAACCAATGAGGAAAAAGATAGCTTTTGTTTCATTGAAGTGATA 1738
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1758 AAAGCAATCAACACGGCAACCAATGAGGAAAAAGAGAGCTTTTGTTTCATTGAAGTGATA 1817
Query 1739 GTGCACAAAGACGATACAAGCAAGGAGCTTTTGGAGTGGGGTTCTAGAGTCTCTGCTGCC 1798
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1818 GTGCACAAAGACGATACAAGCAAGGAACTTTTGGAGTGGGGCTCTAGAGTCTCTGCTGCT 1877
Query 1799 AATAGTCGTCCCCCAAATCCTCAGTAGAGTCA-ATAGATGCAATCAACTTATATATATAT 1857
|||||||||||||||||||| ||||||||| | ||| ||||| ||||||||||||||| |
Sbjct 1878 AATAGTCGTCCCCCAAATCCGCAGTAGAGT-ATATAAATGCACTCAACTTATATATAT-T 1935
Query 1858 TTCC-ATTTGGTAGTTTCTTCGCCGTTTTATGTAAAGTAGTGTGTATCCTTTTACACCCA 1916
| | |||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 1936 T-CAGATTTGGTAGTGTCTTCACCGTTCTATGTAAAGTAGTGTGGATCCTTTTACACCCA 1994
Query 1917 TCTGGATGGGAAAACAATGTGTGTCCCCTTGAGGATATAAGTTGTTTGAGTGCCTAAATA 1976
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1995 TCTGGATGGGAAAAAAATGTGTGTCCCCTTGAGGATATAAACTGTTTGAGTGCCTAAATA 2054
Query 1977 ACAAACT-GTTTCCTCTGCTTC 1997
| || || ||||||||||||||
Sbjct 2055 AGAA-CTTGTTTCCTCTGCTTC 2075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98945274195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5