BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495590 Length=1787 Score E Sequences producing significant alignments: (Bits) Value AT5G55070.1 | Symbols: | Dihydrolipoamide succinyltransferase ... 2686 0.0 AT4G26910.1 | Symbols: | Dihydrolipoamide succinyltransferase ... 1295 0.0 AT2G13580.1 | Symbols: | pseudogene, similar to OSJNBa0072K14.... 147 5e-34 > AT5G55070.1 | Symbols: | Dihydrolipoamide succinyltransferase | chr5:22347211-22350817 FORWARD LENGTH=1998 Length=1998 Score = 2686 bits (1454), Expect = 0.0 Identities = 1682/1787 (94%), Gaps = 36/1787 (2%) Strand=Plus/Plus Query 1 AAGGAAATAAGACACGTGTAAAATCCTCTGAATTTTCCATATTC-TTCGTGACTTTGCTC 59 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 2 AAGGAAATAAGACACGTGTAAAATCCTCTGAATTTTCCATATTCTTTCGTGAC-TTGCTC 60 Query 60 AAAGCTGAGAAAGGTCATATGCTTTTCTCCAG----------T-TC---CTCTCTCCTCC 105 ||||| |||||||||||||||||||||||||| | || ||||||||||| Sbjct 61 AAAGCAGAGAAAGGTCATATGCTTTTCTCCAGTTCCTCTCTCTGTCTATCTCTCTCCTCC 120 Query 106 TTCAATAATTTCTGCAAACCCTAAATTTCTCATTCGGCGCTCAAGTTTCTTCT-CTCCAC 164 |||||||||||||||||||||||| |||||||||||||||||||||||| ||| | || | Sbjct 121 TTCAATAATTTCTGCAAACCCTAACTTTCTCATTCGGCGCTCAAGTTTC-TCTCCACC-C 178 Query 165 C-TCTAGATTTGGTGCGATGATGTTGCGTGCTCTTATTAGGAGAGCTTCCACGAGAGGCT 223 | || ||||||||||||||||||||||||||| || ||||||||||||||| ||||||| Sbjct 179 CTTCGAGATTTGGTGCGATGATGTTGCGTGCTGTTTTTAGGAGAGCTTCCATTAGAGGCT 238 Query 224 CTTCTTGTGCTTCGGGATTGGGAAAATC-TCTGCAATCTTCTCGTGTTGTAGCGTCTGCC 282 |||||| ||||||||||||||||||||| | ||||||| |||||||||| || |||||| Sbjct 239 CTTCTTCTGCTTCGGGATTGGGAAAATCAT-TGCAATCCTCTCGTGTTGCAGTGTCTGCT 297 Query 283 CAATTTCATTCTGTTTCAGCTACTGAGACGTTGGTACCTCGTGGAAACCATGCTCGTAGC 342 |||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |||| Sbjct 298 CAATTTCATTCTGTTTCAGCAACAGAGACGTTGGTGCCTCGTGGAAACCATGCTCATAGC 357 Query 343 TTCCATCACCGTTCTTGTCCAGGGTGTCCAGACTGTTCAAGGACTGTTTTCAACGGTTAC 402 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 358 TTCCATCACCGTTCTTGTCCAGGGTGTCCAGACTGTTCAAGGACTATTATCAACGGTTAC 417 Query 403 CAAGGCACAGCCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGATGTCGTG 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 CAAGGCACAGCCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGATGTCGTG 477 Query 463 GAAGCTGTTGTGCCACACATGGGTGAATCAATCACCGATGGAACCCTAGCCACCTTTCTG 522 ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| Sbjct 478 GAAGCTGTTGTGCCACACATGGGTGAATCAATCACTGATGGCACCCTAGCCGCCTTTCTG 537 Query 523 AAGAAACCTGGTGACAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAACTGACAAG 582 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 AAGAAACCTGGCGATAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAACTGACAAG 597 Query 583 GTTACAATAGATATTGCTAGCCCAGCAAGTGGAGTGATCCAAGAGTTTCTAGTCAAGGAA 642 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 598 GTTACAATAGATATTGCTAGCCCAGCAAGTGGTGTGATCCAAGAGTTTCTAGTCAAGGAA 657 Query 643 GGAGACACTGTTGAACCAGGAAACAAGGTTGCTAGAATTTCTACATCTGCGGATGCTGTG 702 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 658 GGAGATACTGTTGAACCAGGAAACAAGGTTGCAAGAATTTCTACATCTGCGGATGCTGTG 717 Query 703 TCTCATGTTGCACCCTCAGAAAAGACACCAGAGAAACCTGCTCCCAAGCCTTCTCCTCCT 762 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 718 TCTCATGTGGCACCCTCAGAAAAGGCACCAGAGAAACCTGCTCCCAAGCCTTCTCCTCCT 777 Query 763 GCTGAGAAGCCCAAAGTTGAAAGTACTAAAGTTGCAGAGAAACCCAAGGCACCATCACCG 822 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 778 GCTGAGAAGCCCAAAGTTGAAAGTACCAAAGTTGCAGAGAAACCCAAGGCACCATCACCG 837 Query 823 CAACCGCCACCGCC--C-AAACAGTCAGCTAAAGAACCGCAGCTCCCTCCTAAGGATAGG 879 | ||| |||||||| | |||||||||||||||||||||||||| || |||||||||||| Sbjct 838 CCACCTCCACCGCCATCCAAACAGTCAGCTAAAGAACCGCAGCTTCCACCTAAGGATAGG 897 Query 880 GAAAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGCTGAAAGACTCT 939 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 898 GAAAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCT 957 Query 940 CAAAACACTTTTGCTTTGCTGACAACTTTCAATGAAGTTGATATGACTAATCTGATGAAG 999 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 CAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATATGACTAATCTGATGAAG 1017 Query 1000 CTCCGATCTCAGTACAAGGATGCtttttttGAAAAGCACGGAGTGAAGTTGGGGCTTATG 1059 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1018 CTCCGATCTCAGTACAAGGATGCTTTTCTTGAAAAGCACGGAGTGAAGTTGGGGCTTATG 1077 Query 1060 TCTGGTTTCATTAAAGCCGCTGTTAGCGCCCTCCAGCACCAACCAGTAGTAAATGCAGTT 1119 |||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1078 TCTGGTTTCATTAAGGCTGCTGTTAGTGCCCTCCAGCACCAACCTGTAGTAAATGCAGTT 1137 Query 1120 ATCGACGGGGACGATATCATTTACAGAGACTACGTGGATATCAGTATCGCTGTTGGTACC 1179 ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 ATCGATGGAGATGATATCATTTACAGAGACTACGTGGATATCAGTATCGCTGTTGGTACC 1197 Query 1180 TCTAAGGGTCTTGTGGTTCCAGTCATAAGAGATGCTGATAAAATGAACTTTGCTGACATA 1239 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1198 TCTAAGGGTCTTGTAGTTCCAGTCATAAGAGATGCTGACAAAATGAACTTTGCTGACATA 1257 Query 1240 GAGAAAACAATAAACGGTCTTGCTAAGAAGGCTAATGAAGGAACCATATCAATCGACGAG 1299 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 1258 GAGAAAACAATAAACGGTCTCGCTAAGAAGGCTACTGAAGGAACCATATCAATCGATGAG 1317 Query 1300 ATGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTATGGAAGTCTTATAAGCACT 1359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 ATGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTATGGAAGTCTTATAAGCACT 1377 Query 1360 CCTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCATTCGATTGTGCAACGTCCA 1419 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1378 CCTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCATTCAATTGTGCAACGTCCA 1437 Query 1420 ATGGTTGTGGGAGGAAGCGTAGTACCGAGGCCAATGATGTATGTCGCACTGACTTACGAT 1479 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1438 ATGGTTGTGGGAGGAAGCGTAGTTCCGAGGCCAATGATGTATGTCGCGCTGACTTACGAT 1497 Query 1480 CATAGGCTGATTGATGGAAGAGAGGCTGTGTATTTCCTGCGCCGTATCAAGGATGTTGTG 1539 |||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 1498 CATAGGCTAATTGATGGAAGAGAGGCTGTGTATTTCTTGCGCCGTATTAAGGATGTTGTG 1557 Query 1540 GAAGATCCTCAGAGGCTTCTTCTCGACATATGATAAAGATCTAAGACAGGAGAGATCATA 1599 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 1558 GAAGATCCTCAGAGGCTTCTTCTCGACATATGATAAAGATCCAAGACAGAAGAGATCATA 1617 Query 1600 AGTTTCTGTCTTTTTACCAGTTTCCGTTCAGGTTCAGGTAAACCACTACAGATATTGCAA 1659 ||||||||||||||||||||||||| ||||||| | |||||| ||| |||| ||||| Sbjct 1618 AGTTTCTGTCTTTTTACCAGTTTCCTTTCAGGT--A---AAACCATTACGGATACTGCAA 1672 Query 1660 TCTGCAAATGATACTTCTGAGaaaaa-aaCGAAACttttttt--GGAGTTC-CTTAATAG 1715 |||||||||||| ||| ||| ||||| ||||||||||||||| |||||| |||||||| Sbjct 1673 TCTGCAAATGATGCTT-TGA-AAAAAGAACGAAACTTTTTTTTTGGAGTTTTCTTAATAG 1730 Query 1716 TTCCAAGAGTTTTTACCGGGCGAGGAAAGCATCGGTGTATACAGTTT 1762 || |||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1731 TTTTAAGAGTTTTTGCCGGGCGAGGAAAGCATCGGTGTATTGAGTTT 1777 Score = 63.9 bits (34), Expect = 5e-09 Identities = 34/34 (100%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 1754 ATACAGTTTGAACAAAATGTTACAATTTTGACTT 1787 |||||||||||||||||||||||||||||||||| Sbjct 1798 ATACAGTTTGAACAAAATGTTACAATTTTGACTT 1831 > AT4G26910.1 | Symbols: | Dihydrolipoamide succinyltransferase | chr4:13519811-13523222 REVERSE LENGTH=1815 Length=1815 Score = 1295 bits (701), Expect = 0.0 Identities = 1024/1180 (87%), Gaps = 22/1180 (2%) Strand=Plus/Plus Query 413 CCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGATGTCGTGGAAGCTGTTG 472 |||||||||||||||||||||| |||||| |||| | ||| ||| ||||||||| |||| Sbjct 334 CCCTGCAAAGATGGGTCAGGCCTTTTTCAGCTGAAACTGGAGATACCGTGGAAGCAGTTG 393 Query 473 TGCCACACATGGGTGAATCAATCACCGATGGAACCCTAGCCACCTTTCTGAAGAAACCTG 532 |||| || ||||| |||||||| || ||||| ||| | |||||||||||||||||||||| Sbjct 394 TGCCTCATATGGGGGAATCAATTACTGATGGCACCTTGGCCACCTTTCTGAAGAAACCTG 453 Query 533 GTGACAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAACTGACAAGGTTACAATAG 592 |||| ||||| | |||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 454 GTGAGAGAGTCCAGGCTGATGAGGCTATTGCACAAATTGAAACTGATAAGGTGACAATAG 513 Query 593 ATATTGCTAGCCCAGCAAGTGGAGTGATCCAAGAGTTTCTAGTCAAGGAAGGAGACACTG 652 |||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||| Sbjct 514 ATATTGCTAGCCCAGCAAGTGGTGTAATCCAAGAGTTTCTAGTCAACGAAGGAGATACTG 573 Query 653 TTGAACCAGGAAACAAGGTTGCTAGAATTTCTACA-TCTGCGGATGCTGTGTCTCATGTT 711 | |||||||||| |||||| |||| || || | | |||| |||| ||| ||||| ||| Sbjct 574 TAGAACCAGGAACCAAGGTCGCTATTATATC-AAAGTCTGAGGATACTGCATCTCAGGTT 632 Query 712 GCACCCTCAGAAAAGACACCAGAGA-AACCTGCTCCCAAGCCTTCTCCTCCTGC------ 764 | ||||| | |||| |||||||| || ||| | |||| |||||||||||||| Sbjct 633 ACCCCCTCTCAGAAGATACCAGAGACAA-CTGATACCAAACCTTCTCCTCCTGCTGAAGA 691 Query 765 T--G-AGAAGCCCAAAGTTGAAAGTACTAAAGTTGCAGAGAAACCCAAGGCACCATCACC 821 | | ||||||||| ||| |||||| || || |||||||||||||| ||||||| || Sbjct 692 TAAGCAGAAGCCCAGAGTGGAAAGTGCTCCTGTAGCAGAGAAACCCAAAGCACCAT--CC 749 Query 822 GCAACCGCCACCGCCCAAACAGTCAGCTAAAGAACCGCAGCTCCCTCCTAAGGATAGGGA 881 | ||| || || ||||||||||| ||||||||||||||||| ||||||||||| || || Sbjct 750 TC-ACCACCTCCACCCAAACAGTCTGCTAAAGAACCGCAGCTTCCTCCTAAGGAAAGAGA 808 Query 882 AAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGCTGAAAGACTCTCA 941 |||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||| Sbjct 809 AAGACGGGTTCCGATGACAAGACTTCGGAAACGAGTTGCAACAAGATTGAAAGACTCTCA 868 Query 942 AAACACTTTTGCTTTGCTGACAACTTTCAATGAAGTTGATATGACTAATCTGATGAAGCT 1001 ||| ||||| || |||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 869 AAATACTTTCGCGTTGCTGACAACTTTCAATGAAGTTGATATGACAAATTTGATGAAGCT 928 Query 1002 CCGATCTCAGTACAAGGATGCtttttttGAAAAGCACGGAGTGAAGTTGGGGCTTATGTC 1061 |||||| || ||||||||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct 929 CCGATCCCAATACAAGGATGCATTTTATGAAAAGCATGGAGTGAAGTTGGGGCTTATGTC 988 Query 1062 TGG-TTTCATTAAAGCCGCTGTTAGCGCCCTCCAGCACCAACCAGTAGTAAATGCAGTTA 1120 ||| ||| |||||||| |||||||||||||| ||||| |||||||| ||||||||||||| Sbjct 989 TGGATTT-ATTAAAGCTGCTGTTAGCGCCCTTCAGCATCAACCAGTTGTAAATGCAGTTA 1047 Query 1121 TCGACGGGGACGATATCATTTACAGAGACTACGTGGATATCAGTATCGCTGTTGGTACCT 1180 | |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1048 TTGACGGGGATGATATCATATACAGAGACTATGTGGATATCAGTATCGCTGTTGGTACCT 1107 Query 1181 CTAAGGGTCTTGTGGTTCCAGTCATAAGAGATGCTGATAAAATGAACTTTGCTGACATAG 1240 ||||||| ||||| || ||||||||||||| ||||||||||||||||||||| || |||| Sbjct 1108 CTAAGGGACTTGTAGTACCAGTCATAAGAGGTGCTGATAAAATGAACTTTGCCGAGATAG 1167 Query 1241 AGAAAACAATAAACGGTCTTGCTAAGAAGGCTAATGAAGGAACCATATCAATCGACGAGA 1300 |||| || |||||| ||||| |||||||| ||||||||||||||||| || || |||| Sbjct 1168 AGAAGACGATAAACTCACTTGCCAAGAAGGCAAATGAAGGAACCATATCCATAGATGAGA 1227 Query 1301 TGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTATGGAAGTCTTATAAGCACTC 1360 |||| || ||||||||||| || |||||||| ||||||||||||||||| |||||||||| Sbjct 1228 TGGCTGGCGGATCATTCACCGTTTCAAATGGCGGTGTCTATGGAAGTCTCATAAGCACTC 1287 Query 1361 CTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCATTCGATTGTG-CAACGTCCA 1419 | ||||| || |||||||||||||| || || || ||||| ||||||||| || |||||| Sbjct 1288 CGATCATTAATCCTCCTCAGTCTGCCATACTCGGCATGCACTCGATTGTGTCA-CGTCCA 1346 Query 1420 ATGGTTGTGGGAGGAAGCGTAGTACCGAGGCCAATGATGTATGTCGCACTGACTTACGAT 1479 ||||| || |||||||||||||| || || |||||||||||||||||||| || || ||| Sbjct 1347 ATGGTAGTAGGAGGAAGCGTAGTGCCTAGACCAATGATGTATGTCGCACTTACGTATGAT 1406 Query 1480 CATAGGCTGATTGATGGAAGAGAGGCTGTGTATTTCCTGCGCCGTATCAAGGATGTTGTG 1539 || |||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| Sbjct 1407 CACAGGCTGATTGATGGTAGAGAGGCTGTGTACTTCCTGCGCCGTGTCAAGGATGTTGTG 1466 Query 1540 GAAGATCCTCAGAGGCTTCTTCTCGACATATGATAAAGAT 1579 || ||||| || ||||||||||| ||||||| | |||||| Sbjct 1467 GAGGATCCACAAAGGCTTCTTCTTGACATAT-A-AAAGAT 1504 > AT2G13580.1 | Symbols: | pseudogene, similar to OSJNBa0072K14.8, blastp match of 34% identity and 3.7e-06 P-value to GP|21740743|emb|CAD40552.1||AL606621 OSJNBa0072K14.8 {Oryza sativa (japonica cultivar-group)} | chr2:5658456-5659763 FORWARD LENGTH=1308 Length=1308 Score = 147 bits (79), Expect = 5e-34 Identities = 87/91 (96%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 1089 CCTCCAGCACCAACCAGTAGTAAATGCAGTTATCGACGGGGACGATATCATTTACAGAGA 1148 ||||||||||||||| |||||||||||||||||||| || || ||||||||||||||||| Sbjct 795 CCTCCAGCACCAACCTGTAGTAAATGCAGTTATCGATGGAGATGATATCATTTACAGAGA 854 Query 1149 CTACGTGGATATCAGTATCGCTGTTGGTACC 1179 ||||||||||||||||||||||||||||||| Sbjct 855 CTACGTGGATATCAGTATCGCTGTTGGTACC 885 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88403159745 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5