BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495603
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55180.2 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2124 0.0
> AT5G55180.2 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr5:22388782-22390714 FORWARD LENGTH=1603
Length=1603
Score = 2124 bits (1150), Expect = 0.0
Identities = 1327/1412 (94%), Gaps = 13/1412 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGTTTTCGTTTTATCTCTAGTACTCCTACTCTCTTCATTCTCAGCCATTCCCTTC 60
||||| || ||||||||||||| ||||| |||||||||| |||||||||||||| |||
Sbjct 53 ATGGCGGTCTTCGTTTTATCTC---TACTCATACTCTCTTCCTTCTCAGCCATTCCATTC 109
Query 61 ACTTACGCAGATTCTGGAATGATCGGAGTGAATTACGGTCGGATTGCAGACAATCTTCCG 120
||||| ||||||||||||||||||||||| || ||||| || || |||||||||||||||
Sbjct 110 ACTTATGCAGATTCTGGAATGATCGGAGTTAACTACGGCCGTATAGCAGACAATCTTCCG 169
Query 121 GCACCGGAGAAAGTAGTCGAGCTGCTTAAAACACAAGGAATCAACCGCGTCAAGCTTTAC 180
||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||
Sbjct 170 GCACCGGAGAAAGTAGTTGAGCTACTGAAAACACAAGGAATCAACCGCATCAAGCTTTAC 229
Query 181 GACACCGAGAAAACCGTACTAACCGCACTCGCAAACTCCGGAATCAAAGTCGTTGTCTCT 240
|||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 230 GACACCGAGACAACTGTACTAACCGCACTCGCGAACTCCGGAATCAAAGTCGTTGTCTCT 289
Query 241 CTCCCCAACGAAAATCTCGCCTCCGCCGCCGCAGATCAGAGTTACACCGACACCTGGGTT 300
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 290 CTCCCCAACGAAAACCTCGCTTCCGCCGCCGCAGATCAGAGCTACACCGACACTTGGGTT 349
Query 301 CAGGAAAACATAAAGAAATACATTCCGGCGACGGATATCGAAGCAATCGCCGTCGGTAAC 360
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || |||
Sbjct 350 CAGGACAACATAAAGAAGTACATTCCAGCGACGGATATCGAAGCAATCGCCGTTGGGAAC 409
Query 361 GAAGTCTTCGTCGATCCGAGGAACACGACGACGTATCTCGTTCCAGCTATGAAGAACGTT 420
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 410 GAAGTGTTCGTCGATCCGAGGAACACGACGACGTATCTCGTTCCAGCTATGAAGAATGTT 469
Query 421 CAAAGCTCTCTCGTTAAGTTCAATCTCGACAAATCCATTAAGATTTCGTCGCCGATTGCT 480
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 470 CAAAGCTCTCTCGTCAAGTTCAATCTCGACAAATCCATTAAGATCTCGTCGCCGATTGCT 529
Query 481 TTAAGCGCGTTAGCGAGTTCGTATCCACCGTCGGCTGGTTCTTTTAAACCGGAGTTAATC 540
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 530 TTAAGCGCGTTGGCGAGTTCGTATCCACCGTCGGCTGGTTCGTTTAAACCGGAGTTAATC 589
Query 541 GAACCGGTTATTAAACCGATGCTTGATCTCATTCGCAAAACGTCGTCGCATCTCATGGTG 600
|||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 590 GAACCGGTTATTAAACCGATGCTTGATCTCCTCCGCAAAACGTCGTCGCATCTTATGGTG 649
Query 601 AATGCTTATCCGTTCTTCGCTTACGCAGCTAACGCCGATAAGATCTCGTTGGATTACGC- 659
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AATGCTTATCCTTTCTTTGCTTACGCAGCTAACGCCGATAAGATCTCGTTGGATTACGCG 709
Query 660 TCTGTTTAAAGATAACACCGGAAATGTTGATTCCGGTAACGGATTGAAGTATAACAGTCT 719
| ||||||| || ||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 710 T-TGTTTAAGGAGAACGCCGGGAATGTTGATTCCGGTAACGGTTTGAAGTATAACAGTCT 768
Query 720 CTTAGACGCTCAGATCGACGCCGTTTTCGCCGCTATGTCCGCCGTTGGATTTAACGACGT 779
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 769 CTTAGACGCTCAGATCGACGCCGTTTTCGCCGCAATGTCCGCCGTTGGATTTAACGACGT 828
Query 780 TAAGCTCGTGGTGACGGAGACTGGCTGGCCTTCTGCCGGAGATGAGAACGAGATCGGTGC 839
|||||| |||||||| ||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 829 TAAGCTTGTGGTGACAGAGACAGGCTGGCCTTCTGCCGGAGACGAGAACGAGATTGGTGC 888
Query 840 TGGTTCGGCTAACGCGGCGTCTTATAACGGCGGATTAGTGAAGAGAGTGTTAACGGGAAA 899
||||||||||||||||||| | ||||||||||| ||||| || |||||||| ||||||||
Sbjct 889 TGGTTCGGCTAACGCGGCGGCGTATAACGGCGGGTTAGTTAAAAGAGTGTTGACGGGAAA 948
Query 900 CGGAACGCCGTTAAAACCGAAGGAGCCACTTAACGTTTATTTGTTCGCTCTGTTTAACGA 959
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 949 CGGAACGCCGTTAAAACCGAAGGAGCCACTAAACGTTTATCTGTTCGCTCTGTTTAACGA 1008
Query 960 AAATCAAAAAACAGGTCCGACTTCTGAGAGAAACTACGGGTTGTTTTACCCAAACGAGAA 1019
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GAATCAGAAAACGGGTCCGACTTCTGAGAGAAACTACGGGTTGTTTTACCCAAACGAGAA 1068
Query 1020 CAAAGTGTATGACGTTTCGCT-TTCTGGTAAGTCAACGCCGGTCAACGATAACAAAGAGA 1078
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1069 CAAAGTGTATGACGTTTCGCTCAAC-GGTAAGTCAACGCCGGTCAACGATAACAAAGAGA 1127
Query 1079 AGGTTGTTCCGGTGAAGCCGTCGCACGTGGGACAGACGTGGTGTGTGGCGAATGGGAAAA 1138
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1128 AGGTTGTTCCGGTGAAACCGTCGCTCGTGGGACAGACGTGGTGTGTGGCGAATGGTAAAA 1187
Query 1139 CGACGAAGGAGAAGCTTCAGGAAGGTCTCGACTACGCTTGTGGCGAAGGAGGTGCTGATT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CGACGAAGGAGAAGCTTCAGGAAGGTCTCGACTACGCTTGTGGCGAAGGAGGTGCTGATT 1247
Query 1199 GCCGTCCGATTCAGCCGGGTGCCACGTGTTATAATCCTGAATCGTTAGAGGCTCACGCTT 1258
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1248 GCCGTCCGATTCAACCGGGTGCCACGTGTTATAATCCTGAATCGTTAGAAGCTCACGCTT 1307
Query 1259 CTTACGCGTTCAACAGTTACTATCAAAAGAACGCACGTGGTGTTGGCACGTGTAATTTTG 1318
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1308 CCTACGCGTTCAACAGTTACTATCAGAAGAACGCACGTGGAGTTGGCACGTGTAATTTTG 1367
Query 1319 GTGGTGCAGCGTACGTGGTCTCGCAACCTCCTA--A--GTATGGAAAATGCGAGTTTCCA 1374
||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct 1368 GTGGTGCAGCGTACGTGGTCTCGCAACCTCCTAGTAAAGTATGGGAAATGCGAGTTTCCA 1427
Query 1375 ACAGAGCATTGAAATGGATA-AGAAGAAGAAG 1405
|||| ||||||||||||||| ||| |||||||
Sbjct 1428 ACAGGGCATTGAAATGGATATAGA-GAAGAAG 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71234573355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5