BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495607 Length=1796 Score E Sequences producing significant alignments: (Bits) Value AT5G55220.1 | Symbols: | trigger factor type chaperone family ... 2608 0.0 > AT5G55220.1 | Symbols: | trigger factor type chaperone family protein | chr5:22397616-22400842 FORWARD LENGTH=1869 Length=1869 Score = 2608 bits (1412), Expect = 0.0 Identities = 1640/1747 (94%), Gaps = 27/1747 (2%) Strand=Plus/Plus Query 1 AAGAAGAAGTGGCGCTTCATTCATTAG--C---TC----TAAGCAAGAAGAGAGAGCGAA 51 ||||||||||||||||||||||||||| | || ||||||||||||||||||||| Sbjct 1 AAGAAGAAGTGGCGCTTCATTCATTAGCTCTGTTCAGTATAAGCAAGAAGAGAGAGCGAA 60 Query 52 AATGGAGCTCTGTGTTATCAGCACGACGACGACGGCGAAGGCGATTAATACGTTTCTTCC 111 ||||||||||||||||||||||||||| ||||||| |||||| |||||| |||||||||| Sbjct 61 AATGGAGCTCTGTGTTATCAGCACGACTACGACGGTGAAGGCAATTAATCCGTTTCTTCC 120 Query 112 GTCCATTACACGCCGTGTTAGCTCCCGTCTCATCCAATCAGATAGTGTGTTACAGTTTGG 171 ||| |||||||| |||||||| ||||||||| ||||||||||||||||| |||||||||| Sbjct 121 GTCTATTACACGTCGTGTTAGTTCCCGTCTCTTCCAATCAGATAGTGTGCTACAGTTTGG 180 Query 172 TAGGAGGCTGAAGAAACCAATTAGCA-GCCAATTGGAGATGTCTTGTGTCTCTAGAAATT 230 | ||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 181 TGGGAGGTTGAAGAAACCAATTAGCAGGCC-TTTGGACATGTCTTGTGTCTCTAGAAAAA 239 Query 231 TTGGACTTCTCGGAGGTTCTATTTCTATTAGCGGCGGTGGTGATTTTAGGCTGTTCGCGG 290 ||||| || |||||| || ||| || | | |||||| |||||||||| ||||||| Sbjct 240 TTGGATTTTTCGGAGATTTTATGTC----A-C-ATGGTGGTAATTTTAGGCTATTCGCGG 293 Query 291 CGGCTTCTCCGGCGGTTGAAACCAGTGTAAAGGAAGACAAGCTTCCAGCTGATCTTAAGG 350 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 294 CGGCTTCTCCAGCGGTTGAAACTAGTGTAAAGGAAGACAAACTTCCAGCTGATCTTAAGG 353 Query 351 TCACCGAGACTCTACAGGCGAATTCAAGTGTGAAATTGAGTGTGGAAGTTCCAGCCATTG 410 |||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 354 TCACGGAGACTGTACAGGCGAATTCAAGTGTGAAATTGAGTGTGGAAGTTCCAGAAATTG 413 Query 411 TTTGTGAAGATTGTTACCAACGAGTTCTAACAGAGTTCATGAAGCTCTCAAAGGTGCCTG 470 | ||||||||||||||||||||||| || || || |||||||| |||||||||||||||| Sbjct 414 TCTGTGAAGATTGTTACCAACGAGTCCTTACCGAATTCATGAAACTCTCAAAGGTGCCTG 473 Query 471 GATTCCGTCCTAAAACGAGAGTGCCAGAGAATATTATTGTTGGTTTCGTTGGGAGGCAAT 530 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 474 GATTCCGTCCTAAAACAAGAGTTCCAGAGAATATTATTGTTGGTTTCGTTGGGAGGCAAT 533 Query 531 ACGTTTTGAGAGCAACTGTTGAATCTATCTTGAAGAGAACACTTCCTCACGCCATGGAAT 590 | ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 534 ATGTTCTGAGAGCAACTGTTGAATCTATCTTAAAGAGAACACTTCCTCACGCCATGGAAT 593 Query 591 CAGTGACTGGAAGGGCTTTAAAAGACTCAATACAGATTGTAAGCAGCTTTCCAGAGATGG 650 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 594 CAGTGACTGGAAGGGCTTTAAAAGACTCGATACAGATTGTAAGCAGTTTTCCAGATATGG 653 Query 651 AGAAGGCTTATTCTAAGCTCAAGACTCTTAGTTATGAGGTGGTTGTTGATGTTGTGCCTG 710 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 654 AGAAGGCTTATTCTAAGCTCAAGACTCTTAGTTATGAGGTGGTTGTTGATGTTGTACCTG 713 Query 711 AACTAAGATGGAATCCTGAGGATGGGTACAAAAATATGAAGGTCGTTGTAGAACTAGGCG 770 |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 714 AACTAAAATGGAATCCTGAGGATGGGTATAAAAATATGAAGGTCGTTGTAGAACTAGGCG 773 Query 771 ACGAGATAGATGCGAAAAAAGCTTGTGAAAGACAACTAAGACAGAAATACAAGTCCCTTG 830 | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 774 ATGAGATAGATGCAAAAAAAGCTTGTGAAAGACAACTAAGACAGAAATACAAGTCTCTTG 833 Query 831 GTGCGCTGAAGATTGTAACTGACCGAGGGCTACAGGTGGGAGATCTTGCAGTCGTTGATA 890 ||||| ||||||||||||| || ||||||||||||||||||||||| ||||| ||||||| Sbjct 834 GTGCGTTGAAGATTGTAACCGAGCGAGGGCTACAGGTGGGAGATCTAGCAGTTGTTGATA 893 Query 891 TTTCTGCTACAACTATAGATGAGGATGGATCAACGGGTCAAGCGATTCCAGATGCGGAAA 950 ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| Sbjct 894 TTTCTGCTACAACTATAGATGAGGACGGGTCAACGGGTCAAGCGATTCCAGATGCTGAAA 953 Query 951 GCAAAGGTTTTCACTTTGACACTGAAGAAGGGAATAGATTACTTCCTGGATTCCTTGATT 1010 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 GCAAAGGTTTTCACTTTGACACTGAAGAAGGGAATAGATTACTTCCTGGATTCCTTGATG 1013 Query 1011 CAATCATAGGAATTAGAGCTGGCGAATCGAAGTCATTCACGCTTGTGTTTCCTGAATCAT 1070 |||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1014 CAATCATAGGAATTCGAGCAGGCGAATCAAAGTCATTCACGCTTGTGTTTCCTGAATCAT 1073 Query 1071 GGAAACAAGAAAGTCTTCGTGGCCAACGTGCTCAATTCACTGTTGACTGCAAGGAACTTT 1130 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 GGAAACAAGAAAGTCTACGTGGCCAACGTGCTCAATTCACTGTTGACTGCAAGGAACTTT 1133 Query 1131 TCTACAGAGATTTACCAACATTAGATGACTCACTTGCTGATAAATTACTTCCTGGATGCA 1190 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1134 TCTACAGAGATTTACCAACATTAGATGACTCACTCGCTGATAAATTGCTTCCTGGATGCA 1193 Query 1191 CCACTTTAAAGGAGGTTGAAGAAACTCTGGCTAAAAGATGTCAAGAGATGGAGCAGGAAG 1250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 CCACTTTAAAGGAGGTTGAAGAAACTCTGGCTAAAAGATGTCAAGAGATGGAGCAGGAAG 1253 Query 1251 CCAAGGACCAAGCGACAGACAACGCCATCCTTGACCAGATTCGAAAGATGGTTGAAGTAG 1310 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1254 CCAAGGAGCAAGCGACAGACAACGCCATCCTTGAGCAGATTCGAAAGATGGTTGAAGTAG 1313 Query 1311 AGATTCCTCAATCTTTATTTGAGGAACAAGGAAGACAGTTTTATGGAGCAAGGCTTCTAG 1370 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1314 AGATTCCTCAATCTTTATTTGAGGAACAAGGAAGACAGTTTTATGGAGCTAGGCTTCTAG 1373 Query 1371 AGATTCAGGCAAGTGGAAACATGAAGCTCACCGAAGACCAATTGGCTTCTCTTTCAAGTC 1430 ||||||||| | |||||||||||| | ||||||||| ||||||||||||||||||| Sbjct 1374 AGATTCAGG---G---AAACATGAAGCTTAACGAAGACCAGTTGGCTTCTCTTTCAAGTC 1427 Query 1431 AAAAAGCAGTAAATGAGTTTCTAGAAACTCAAAGAGAAAGCATTACCAACATAATCAAGC 1490 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1428 AAAAAGCAGTAAATGAGTTTCTAGAAACTCAAAGAGAGAGCATCACCAACATAATCAAGC 1487 Query 1491 AGAATTTAGCTGTCGGAGATATCTTCAAGCGCGAAAACTTAGAGTTCTCAACAGATGAAC 1550 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1488 AGAATATAGCTGTTGGAGATATCTTCAAGCGCGAAAACTTAGAGTTCTCAACAGATGAAC 1547 Query 1551 TCGTTAAAGAGGTCGAGAACTCGATCTCAGAATTCAAGAAACATAAACAAGAGTAT-GAC 1609 | |||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1548 TAGTTAAAGAGGTCGAAAACTCGATCTCAGAATTCAAGAAACATAAACAAGAGT-TCGAC 1606 Query 1610 GAAGAGCGTGTGAAAGATCAGGTACAAGAGATTTTAGAAGGAGCAAAAGTGCTTGAATGG 1669 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1607 GAGGAGCGTGTGAAAGATCAGGTACAAGAGATTTTAGAAGGAGCAAAAGTGCTTGAATGG 1666 Query 1670 TTGAAAGACCGAGCCGAGATTCAATACATCACTCGTTGATTAGCATA--GGTAATGTATG 1727 || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1667 TTAAAAGACCGAGCCGAGATTCAATACATCACTCGTTGATTAGCATATAGGTAATGTATG 1726 Query 1728 TATGATT 1734 ||||||| Sbjct 1727 TATGATT 1733 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88854964650 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5