BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495625
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55410.2 | Symbols: | Bifunctional inhibitor/lipid-transfer... 599 1e-170
AT5G55450.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 231 5e-60
> AT5G55410.2 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr5:22460550-22461250
FORWARD LENGTH=701
Length=701
Score = 599 bits (324), Expect = 1e-170
Identities = 399/435 (92%), Gaps = 5/435 (1%)
Strand=Plus/Plus
Query 1 TTTACGTTACGCTCTTAAATTACTACTACCTTTTTAGTTAGCATTTTAGCTTTGTTTATA 60
|||||||||||||||||||||||||||| | ||| |||||||||||| | |||||||||
Sbjct 15 TTTACGTTACGCTCTTAAATTACTACTAAC-TTTCGGTTAGCATTTTAAC-TTGTTTATA 72
Query 61 AACGAGCCCATGATCAT-AAGGGGATTCACAAGTAGAATCTAGAGAAAAGAGAGAATGGG 119
||| ||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 73 AACAAGCTCATGATCATGAGGGGGATTCACAAGTAGAGTCTAGAGAAAAGAGAGAATGGG 132
Query 120 TAAGAACAATACCAGATTCCTGATGCAATTTGCAGCTCTTGCAATAGTTTTAACCGTTGC 179
|||||||||||||| |||||| |||||||||||| || ||||||| ||||||||| ||||
Sbjct 133 TAAGAACAATACCAAATTCCTTATGCAATTTGCAACTTTTGCAATGGTTTTAACCTTTGC 192
Query 180 AATAATGGTGAAAGAAGCTACAAGCATGTCCATTTGTAACATGGACACAAATGATATGCA 239
|| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 193 GATGATGGTCAAAGAAGCTACAAGCATGTCCATTTGTGACATGGACATAAATGATATGCA 252
Query 240 GAAATGTCGTCCAGCCATCACTGGAAACAATCCCCCGCCTCCTGTCAACGAGTGCTGCGT 299
||||||||| |||||||||||||||||||||||||| ||||| ||||| || ||||||||
Sbjct 253 GAAATGTCGCCCAGCCATCACTGGAAACAATCCCCCACCTCCCGTCAATGATTGCTGCGT 312
Query 300 AGTGGTTC-GAGGCGCTAATCTCGAATGCTTATGCAGATTCAAGTTTTATCTCCCGATTT 358
|||||||| || |||||| ||||||||||||||||||| |||||||||||||| ||||
Sbjct 313 AGTGGTTCGGA-AAGCTAATTTCGAATGCTTATGCAGATTTAAGTTTTATCTCCCAATTT 371
Query 359 TACGAATTGATCCATCTAAAGTCGCGGCTCTTGTAGCTAAATGTGGTGTTACAACAGTCC 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 372 TACGAATTGATCCATCTAAAGTCGTGGCTCTTGTAGCTAAATGTGGTGTTACAACAGTCC 431
Query 419 CTCGTGCTTGCCAAG 433
||||| |||||||||
Sbjct 432 CTCGTTCTTGCCAAG 446
> AT5G55450.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr5:22467430-22468263
FORWARD LENGTH=740
Length=740
Score = 231 bits (125), Expect = 5e-60
Identities = 287/362 (79%), Gaps = 24/362 (7%)
Strand=Plus/Plus
Query 100 TAGAGAAAAGAGAGAATGGGTAAGAACAATACCAGATTCCTGATGCAATTTGCAGCTCTT 159
|||| ||||||||||||||||||| |||| |||||| |||| ||||||||| |||||||
Sbjct 117 TAGA-AAAAGAGAGAATGGGTAAGGACAACACCAGAATCCTCATGCAATTTTCAGCTCTC 175
Query 160 GCAATAGTTTTAACCGTTGCAATAATGGTGAAAGAAGCTACAAGCATGTCCA-TTTGTAA 218
|| || |||||||| | |||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 176 GCGATGGTTTTAACAGCTGCAATAATGGTGAAAGAAGCTACAAGCAT-TCCCGTTTGCAA 234
Query 219 CATGGACACAAATGA-TATG-CAGAAATGTCGTCCAGCCATCACTGGAAACAATCCC-CC 275
||| |||||||| || | || | |||||| ||||||||| ||||||||||||| ||| ||
Sbjct 235 CATTGACACAAACGACT-TGGC-GAAATGCCGTCCAGCCGTCACTGGAAACAA-CCCTCC 291
Query 276 GCCTCCTGTCAACG-AGTGCTGCGTAGTGGTTC-GAGGCGCTAATCT-CGAATGCTTATG 332
|| || | | || | ||||||| ||||| | ||| |||||||| | ||||| | ||
Sbjct 292 ACCACCGGG-ACCGGACTGCTGCGCAGTGGC-CAGAGTTGCTAATCTAC-AATGCCTCTG 348
Query 333 CA-GATTCAAGTTTTATCTCCCGATTTTACGA-ATTGATCCATCTAAAGTCGCGGC-TCT 389
| | | |||| ||||||||| | | | || || || ||||||| |||| ||| |||
Sbjct 349 CCCG-TACAAGCCTTATCTCCCCACTGT-CGGGATAGACCCATCTAGAGTCA-GGCCTCT 405
Query 390 TGTAGCTAAATGTGGTGTTACAACAGTCCCTCGTGCTTGCCAAGTTTGAAGAAATGAGCT 449
| | || || |||||||| | |||||||| || || || | ||| ||||||| ||||||
Sbjct 406 TCTTGCCAATTGTGGTGT-A-AACAGTCCTTCCTGTTT-CTAAGCATGAAGAACTGAGCT 462
Query 450 GA 451
||
Sbjct 463 GA 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5