BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495626
Length=256
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55420.1 | Symbols: | Encodes a Protease inhibitor/seed sto... 363 6e-100
> AT5G55420.1 | Symbols: | Encodes a Protease inhibitor/seed storage/LTP
family protein [pseudogene] | chr5:22461840-22462156
FORWARD LENGTH=317
Length=317
Score = 363 bits (196), Expect = 6e-100
Identities = 239/259 (92%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 1 ATCCTGATGCAATTTTCAGCTCTTGCGGTGGTTTTAACCGCTGCAATAATGGTGAAAGAG 60
||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 16 ATCCTGATGCAATTTGCAGCTCTTGCGATGGTTTTAACGGCTGCAATAATGGTGAAAGAA 75
Query 61 GCTACAAGCATTCCCATTTGCAACATCGAGACAAATGACTTGGGAAAATGTGGTCCAGCT 120
|||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 76 GCTAGAAGCATTCCCATTTGCAACATCGAGACAAATGACTTGGTCAAATGTCATCCAGCT 135
Query 121 TTCACAGGCA---A--CAACCCGCCACCTCCGGGACCTGACTGTTGCGCAGTGGTCAAAG 175
||||| || | | |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 136 TTCACTGGAATTGAAACAACCCGCCACCTCCGGGACCTGACTGTTGCGCATTGGTCAGAG 195
Query 176 CCGCTAATCTACAATGCCTTTGCCCGTACAAGCCTTTTCTCTCCAGGTTTGGGATTGATC 235
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 196 CCGCTAATCTACAATGCCTTTGCCCGTACAAGCCTTATCTCTCCAGGTTTGGGATTGATC 255
Query 236 CAACTAAAGTCAGGCCTCT 254
|| ||||||||||||||||
Sbjct 256 CATCTAAAGTCAGGCCTCT 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11662117768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5