BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495645 Length=1965 Score E Sequences producing significant alignments: (Bits) Value AT5G55580.1 | Symbols: | Mitochondrial transcription terminati... 2915 0.0 > AT5G55580.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr5:22515440-22517929 FORWARD LENGTH=2173 Length=2173 Score = 2915 bits (1578), Expect = 0.0 Identities = 1862/1992 (93%), Gaps = 48/1992 (2%) Strand=Plus/Plus Query 1 tttttttttttttttttttGGAATTAGGGTTTTAGGGTATATTCGCAATCGGTCTAATTG 60 |||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||| | Sbjct 51 TTTTTTGTTTGTTTGTTTTGGAATTAGGGTTTTAGGGTATATTCGCAATCACTCTAATCG 110 Query 61 GATAATTCTTCTACTCTGTTAACATTATCTTCTTTTTCGTTCCTACCGCAAATGGCGGGT 120 |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 111 GATAATTCCTCTACTCTGTTAACATTATCTTCTTCTTCGTTCCTACCGCAAATGGCGGGT 170 Query 121 TTCTCACTGTACTGTTTTATAAACCCACGAATTCTCTTTACTCTTCCGTCGGAATCACCT 180 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 171 TTCTCACTGTACTGTTTTAAAAACCCTCGAATTCTCTTTACTCTTCCGTCGGAATCACCT 230 Query 181 CTCTTTGTTTTGGGTTCTGATAAATTTTCGCCGGCGACGAGACGG-CGAAGTAGAAAGAC 239 ||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||| Sbjct 231 CTCTTTGTTTTGGGTTCTGATAAATGTTCACCGGCGACGAGACGGCCG-AGTAGAAAGAC 289 Query 240 TCGTGGGTTCGTCGTAACGTACGCGCACTCTAACCCGAAGATTATCAATCCGAAGAAGAA 299 ||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 290 TCGTGGGTTTGTCGTGACGTACGCGCACTCTAATCCGAAGATAATCAATCCGAAGAAGAA 349 Query 300 GTCGAGGTATGGGCAAACGTTATCTCCATatgacagtgatgaagatgaaga-gct-a-ga 356 |||||||||||||||||||||||||||||||||||||||||||||||| || | | | || Sbjct 350 GTCGAGGTATGGGCAAACGTTATCTCCATATGACAGTGATGAAGATGATGATGATGATGA 409 Query 357 tgatgatgaagatgatgactggttgcttaatgatgaCTTCGCTGAGGTTACAGAGTATGA 416 ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 410 TGATGATGATGATGATGACTGGTTACTTAATGATGATTTCGCTGAGGTTACAGAGTATGA 469 Query 417 GAAGAAGAAGCCTAAGTCACAGAAGCAAACCATTGCTAAGAAAGGTGTGAAGAAAGGGAT 476 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 470 GAAGAAGAAGCCTAAGTCACATAAGCAAACCATTGCTAAGAAAAGTGTGAAGAAAGGGAT 529 Query 477 CGTCAAAAATTGGGAAAAACATGAAGAAAGTGAGACTGATGAAGATGATCTTGATATAGG 536 ||| || | | |||||||||||||||||||||||||||||||||| |||| Sbjct 530 TGTC---AA----G-----CCTGAAGAAAGTGAGACTGATGAAGATGATCTTGATTTAGG 577 Query 537 C----GT--T-A-G-----TC-GA-AA-TAG--GGAGTCTTGGCGTTTAGATGGTCGAGG 578 | || | | | || || || || ||||||||||||||||||||||||||| Sbjct 578 CATTAGTCCTAATGCCACTTCTGAGAAGAAGAAGGAGTCTTGGCGTTTAGATGGTCGAGG 637 Query 579 AAAGGTGAGTTTGAGGAAATATGTCGAGAAACTATACCCTCGGCTCTCAGAAGAGATCGA 638 |||| |||||| |||||| ||||| ||||||||||||||||||||| |||||||||| || Sbjct 638 AAAGATGAGTTCGAGGAAGTATGTGGAGAAACTATACCCTCGGCTCGCAGAAGAGATTGA 697 Query 639 TATAGATCCGAAATGGGTACCACTTCTCGATTACTTGAGCACATTTGGTCTGAAAGAATC 698 ||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||| || Sbjct 698 TATAGATCCGAAATGTGTACCACTTCTGGATTACTTAAGCACATTTGGTTTGAAAGAGTC 757 Query 699 ACACTTTGTTCAAATGTACGAGAGACACATGCCATCCCTTCAGATTAATGTCTTATCAGC 758 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 758 ACACTTTGTTCAAATGTACGAGAGACACATGCCATCCCTTCAGATTAATGTGTTCTCAGC 817 Query 759 GCAAGAGAGACTCGATTACTTGTTGAGTGTCGGTGTTAAACACAGAGATATCAAGAGAAT 818 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 818 TCAAGAGAGACTCGATTACTTGTTGAGTGTCGGTGTTAAACACAGAGATATCAAGAGAAT 877 Query 819 GCTCTTGAGACAACCACAGATACTTCAATACACAGTTGAGAACAATCTCAAAGCTCACAT 878 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 878 GCTCTTGAGACAACCACAGATACTTCAATACACTGTTGAGAACAATCTCAAAGCTCACAT 937 Query 879 TTCCTTTCTAATGGGTCTTGGGATTCCTAATTCCAAAATAGGACAGATAGTTGCTGCTAC 938 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 938 TTCCTTTCTAATGGGTCTTGGCATTCCTAATTCCAAAATAGGACAGATTGTTGCTGCTAC 997 Query 939 CCCGTCTCTGTTCTCTTACAGTGTAGAGAATTCACTGAGACCCACGATAAGGTATCTGAT 998 ||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 998 CCCTTCTCTCTTCTCTTACAGTGTAGAGAATTCATTGAGACCTACGATAAGGTATCTGAT 1057 Query 999 CGAAGAGGTTGGGATAAAGGAAACCGATGTTGGAAAGGTTGTGCAACTTAGCCCTCAGAT 1058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1058 CGAAGAGGTTGGGATAAAGGAAACCGATGTTGGAAAGGTTGTGCAACTTAGCCCTCAGAT 1117 Query 1059 TCTGGTTCAGCGGCTCGACATAACATGGAACACCCGGTACATGTTCCTCTCCAAGGAGTT 1118 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1118 TCTGGTTCAGCGGCTCGACATAACATGGAACACTCGCTACATGTTCCTCTCCAAGGAGTT 1177 Query 1119 GGGAGCACCTAGAGACAGCGTAGTGAAGATGGTGAAGAAACATCCGCAGCTTCTTCACTA 1178 |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1178 AGGAGCACCTAGAGACAGCGTAGTGAAGATGGTAAAGAAGCATCCGCAGCTTCTTCACTA 1237 Query 1179 CAGTATCGATGACGGGTTCTTGCCTCGAATCAATTTCCTTAGGAGCATTGGGATGTGCAA 1238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1238 CAGTATCGATGACGGGTTCTTGCCTCGAATCAATTTCCTTAGGAGCATTGGGATGTGCAA 1297 Query 1239 TTCTGATATACTGAAAGTCTTGACTAGCCTTACACAGGTTTTGTCTCTTTCGCTAGAAGA 1298 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1298 TTCTGATATACTGAAAGTCTTGACTAGCCTTACACAGGTTTTGTCTCTTTCACTAGAAGA 1357 Query 1299 TAATCTAAAGCCTAAGTACATGTATTTGGTCAATGAGCTCAATAATGAAGTGCACATTTT 1358 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 1358 TAATCTAAAACCTAAGTACATGTATTTGGTCAATGAGCTCAATAATGAAGTTCACATTCT 1417 Query 1359 GACCAAATACCCAATGTACTTGAGCTTGTCCTTGGATCAAAGGATACGCCCGCGCCACCG 1418 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1418 GACCAAATACCCAATGTACTTGAGCTTGTCCTTGGATCAAAGGATACGTCCGCGCCACCG 1477 Query 1419 CTTCCTGGTTGAGTTAAAGAAAGTGCGGAAAGGGCCGTTCCCTCTTAGTTCATTAGTTCC 1478 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1478 CTTCTTGGTTGAGTTAAAGAAAGTGCGGAAAGGGCCATTCCCTCTTAGTTCATTAGTTCC 1537 Query 1479 AAATGATGAAAGCTTTTGTCAGCAATGGGCAGGAACCAGTGTAGATACGTATCTCGCCTT 1538 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1538 AAATGATGAAAGCTTTTGTCAGCAATGGGCTGGAACCAGTGTAGATACGTATCTCGCCTT 1597 Query 1539 TCGCCAGAGGCTGTTACTCAAGGAGTTTGCAAACAAGTATGACAAGAGAGTATGATGATG 1598 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1598 TCGCCAGAGGCTGTTACTCAAGGAGTTTGCAAACAAGTATGACAAGAGAGGATGATGATG 1657 Query 1599 GAAATCTCTTGCT-CTTGATTACCGACTACAAGTCAACACTTTGGTTACTTTTCTTGCTT 1657 | |||||||| || ||||||||||||| | |||||||||||||||||| ||| || |||| Sbjct 1658 GGAATCTCTT-CTTCTTGATTACCGACAATAAGTCAACACTTTGGTTAGTTTCCT-GCTT 1715 Query 1658 CAAATCCGGTAAAAGAGGTTCATAAGCAGAACCTGTGAATGAC-CATTAACTTCTGGTGA 1716 |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 1716 CAAATCCGGTAAAAGAGGTTCATATGCAGAACCTGTGAATGACTCATTAACTTCTGGTGA 1775 Query 1717 AACGCGA--TACTGCAAAGATTAAAAACTTTTTCAGGACAAGAAAATCCAGAGAAGCCGG 1774 ||||||| ||||||||||||| || ||||||||||| ||| || |||||||||||||| Sbjct 1776 AACGCGAGATACTGCAAAGATTGAA--CTTTTTCAGGA-AAGTAACTCCAGAGAAGCCGG 1832 Query 1775 CTTGGCACAGACATCATATTTGTTTTACCAGATGAGAGTTTCCACAATCTTTTCCGGGTT 1834 ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct 1833 CTTGGCACAGACATCATATTTGTTT-ACCAGATGAGAGTTTCCTCAATCTTTTCCAGGTT 1891 Query 1835 TTGGCTACATTTCAAGTTCTGCAATGT-TATGTGGTAAAGGTTTACTCTCTTTTTCTCCT 1893 ||| |||||||| ||||||||| |||| | |||||||||| ||||||||||||||||||| Sbjct 1892 TTGTCTACATTTTAAGTTCTGCTATGTCT-TGTGGTAAAGTTTTACTCTCTTTTTCTCCT 1950 Query 1894 CTTCTTTCTAATGAATCACGAAGAAGAGAAACACAATCTGTGTGTAGTATTTTTTGGCCT 1953 |||||||||||||||||| | |||||||||| | |||| |||||||||||||||||||| Sbjct 1951 CTTCTTTCTAATGAATCATGGAGAAGAGAAA-AGAATCCATGTGTAGTATTTTTTGGCCT 2009 Query 1954 AGTATATATATA 1965 |||||||||||| Sbjct 2010 AGTATATATATA 2021 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97338856755 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5