BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495650
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55610.1 | Symbols: | unknown protein; LOCATED IN: mitochon... 2025 0.0
AT4G11830.2 | Symbols: PLDGAMMA2 | phospholipase D gamma 2 | ch... 274 2e-72
> AT5G55610.1 | Symbols: | unknown protein; LOCATED IN: mitochondrion,
chloroplast, plastid, membrane; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22525807-22528110
FORWARD LENGTH=1416
Length=1416
Score = 2025 bits (1096), Expect = 0.0
Identities = 1228/1291 (95%), Gaps = 12/1291 (1%)
Strand=Plus/Plus
Query 1 AGAGAGATTGATTATTCG-ATCGAATCAAGCTTGGTTTGTTAGTAATGGCGGGAATAGCT 59
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 131 AGAGAGATTGATTATT-GCATCGAATCAAGCTTGGTTTGTTAGTAATGGCGGGAATAGCT 189
Query 60 ATAGTTTTAGATCTACTGAAGAAATCTCAATCCAAGCACAGTCTTCACTCATCTTCCTTC 119
||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||
Sbjct 190 TTAGTTTTAGATCTACTGAAGAAATCTCAATCTAAGAACACTCTCCACTCATCTTCCTTC 249
Query 120 TCTTCCGCCTCCGCCGCCGCTGTTTCTGCTGCCGCCACTGCTCCTTTTGCGTCTAGGTTT 179
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 250 TATTCCGCCTCCGCCGCCGCTGTTTCTGCTGCCGCCTCTGCTCCTTTTGCGTCTAGGTTT 309
Query 180 CTCTTCGGTTCTTTTGAGCCTCGAGTTGCGTATTGTGATGCCGCTGCTGGAATAGATGAT 239
||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct 310 CTCTTCGGTTCTTTTGAGCCTAGAGTTGCGTATTGTGATGCTGCTGCTGCAATAGATGAT 369
Query 240 GACTACCTTGGTGCTATACGGAAAATGTCTGCGGATGTTTTGCAGCGTGAACCGCTTGCA 299
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 370 GATTACCTTGGTGCTATACGGAAAATGTCTGCGGATGTTTTGCAGCGTCAACCCCTTGCG 429
Query 300 TATATCTCTAGTTCCAAGGAATACAATATCCAGCCGAAACCAATTTTCTCGGCCTTTGAG 359
||||| ||||| ||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 430 TATATTTCTAGGTCCAAGGAATACAATATCCAGCCAAAACCAGTTCTCTCGGCCTTTGAG 489
Query 360 TTCAGGGCACTTGCAATGACTACAGTGAGATCCCTCCTGATGTTTTATTTGCCTCTTTTG 419
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 490 TTCAGGGCACTTGCAATGACTACAGTGAGATCCCTTTTGATGTTTTATTTGCCTCTTTTG 549
Query 420 GAGCCTAAAACGGCTTCTGAGGACGATGATGATTTCCTAAACAATGCTGCAGAAGAAAAC 479
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 550 GAGCCTAAAACGGCTTCAGAGGATGATGATGATTTCCTAAACAATGCTGCAGAAGAAAAC 609
Query 480 CGCCGCACAGACTTGATTGTTCCTCTTAAAAAGTCAGCCAAGCAAATTGCCCGTGAGACC 539
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 610 CGCCACACAGACTTGATTGTTCCTCTTAAAAAGTCAGCAAAGCAAATTGCCCGTGAGACC 669
Query 540 ACAGTTGTGACCACTCGGAGACTCCTTGAAAGGCTCGCTTTGAGTTATGTCTCACAGCGT 599
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 670 ACAGTTGTGACCACTCGGAGAGTCCTTGAAAGGCTGGCTCTGAGTTATGTCTCACAGCGT 729
Query 600 ATGGCATGGAAACTTCTAAAGGATGTGCCTCAGTCGGCTTTACGCAAGGCTCAGAGAGGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ATGGCATGGAAACTTCTAAAGGATGTGCCTCAGTCGGCTTTACGCAAGGCTCAGAGAGGG 789
Query 660 TTGCCGACACATGTATACATCTTTAAAGTCAGCCAAACAACTCTTAGAGGTCACTTCCTG 719
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 TTGCCGACACATGTATATATCTTTAAAGTCAGCCAAACAACTCTTAGAGGTCACTTCCTG 849
Query 720 GGAATTGCAGCATCATGGGTAGTTCAAGTAGGCATTGAAATATACAGATGTGTGTTCTCG 779
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 850 GGAATCGCAGCATCATGGGTAGTTCAAGTAGGCATTGAAATCTACAGATGTGTGTTCCCG 909
Query 780 AATGTTAAACCCGAGGAAGAAGAAGAGGA--ACAA-GTCGAGATATCACAGCAAGCTAAG 836
|||||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct 910 AATGTTAAACCCGAGGAAGAAGAAGAAGAGGAGAAAGTCGAGATATCACAGCAAGCTAAG 969
Query 837 GACCTCGGAAACAAAGTTGTGGGTATCACAGTACGATGTGGCGCTTCCTTAGTGTTTGCT 896
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 970 GATCTCGGAAACAAAGTTGTGGGTATCACAGTACGATGTGGCGCGTCCTTAGTATTTGCT 1029
Query 897 GCCATTGGAGCCGGTATATGCTCTTGCCTTATCCGTCCCTCCACGGGCCAATGGATTGGC 956
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1030 GCCATTGGAGCCGGGATATGTTCTTGCCTTATCCGTCCCTCCACGGGCCAATGGATCGGT 1089
Query 957 TGCGCGCTGGGGGACTTGGCTGGTCCGATGGTTGTTTCGGTTTGCCTGCAGAAGACTCTT 1016
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TGCGCGCTGGGAGACTTGGCTGGTCCGATGGTTGTTTCGGTTTGCCTGCAGAAGACTCTT 1149
Query 1017 CAAGCTGATTATTAAGTCCTTGTGTGGAAATTGAATTCTTCTACTTGAATCTTGATGATC 1076
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 CAAGCTGATTATTAAGTTCTTGTGTGGAAATTGAATTCTTCTACTTGAATCTTGATGATC 1209
Query 1077 CAAATGAAATCATAGAGCTTGttttttttttCTGAAATTTTCTTATTGTCTTCACTGAAA 1136
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1210 CAAATGAAATCATAGAGCTTGTTTTTTGTTTCTGAAATTT-CTTATTGTCTTCACTGAA- 1267
Query 1137 CCTTAAAAACATTGATCAATAGACTTCTCAACATGTACCTACTTTTGACAACAGCACAAT 1196
||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1268 CCTTAAAAACAATGATCAATAGATTTCTCAAAATGTACCTACTTTTGACAACAGCACAAT 1327
Query 1197 AAGTCAGGTatttattttcact-ggattt-agttttggatctgagatttttccctctctt 1254
||||||||||||||||||| || |||||| ||||||| ||||| |||||||| ||||||
Sbjct 1328 AAGTCAGGTATTTATTTTC-CTCGGATTTTAGTTTTGTATCTGCGATTTTTCT-TCTCTT 1385
Query 1255 ttttacttttGTAAGTATGGATTTTGTGAAC 1285
||| ||||||||||||| |||||||||||||
Sbjct 1386 TTT-ACTTTTGTAAGTAGGGATTTTGTGAAC 1415
> AT4G11830.2 | Symbols: PLDGAMMA2 | phospholipase D gamma 2 |
chr4:7115794-7121245 REVERSE LENGTH=3858
Length=3858
Score = 274 bits (148), Expect = 2e-72
Identities = 240/279 (86%), Gaps = 28/279 (10%)
Strand=Plus/Plus
Query 1 AGAGAGA-TTGAT-TATTCGATCGAATCAAGCTT-GGTTTGTTAGTAATGGCGGGAATAG 57
||||||| ||| | |||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 139 AGAGAGATTTG-TGTATTCGATCGAATCAAGCTTGGGTTTGTTAGTAATGGCGAGAATAG 197
Query 58 CTATAGTTTTAGATCTACTGAAGAAATCTCAATCCAAGCACAGTCTTCACTCATCTTCCT 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CTATAGTTTTAGATCTACTGAAGAAATCTCAATCCAAGCACAGTCTTCACTCATCTTCCT 257
Query 118 TCTCTTCCGCCTCCGCCGCCGCTGTTTCTGCTGCCGCCACTGCTCCTTTTGCGTCTAGGT 177
||||||||||| ||| | || || | || | | | ||||||||||
Sbjct 258 TCTCTTCCGCC---GCCAC---TG---CT-C--CC-----T--T--T---GCGTCTAGGT 293
Query 178 TTCTCTTCGGTTCTTTTGAGCCTCGAGTTGCGTATTGTGATGCCGCTGCTGGAATAGATG 237
|||| ||||||||||| |||||||||||| ||||| ||| || |||||||||||||| |
Sbjct 294 TTCTATTCGGTTCTTTCGAGCCTCGAGTTTCGTATCGTGGTGTTGCTGCTGGAATAGACG 353
Query 238 ATGACTACCTTGGTGCTATACGGAAAATGTCTGCGGATG 276
|||| ||||||||||||||||||||||||||||||||||
Sbjct 354 ATGATTACCTTGGTGCTATACGGAAAATGTCTGCGGATG 392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63202486155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5