BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495677 Length=1475 Score E Sequences producing significant alignments: (Bits) Value AT5G55950.1 | Symbols: | Nucleotide/sugar transporter family p... 2098 0.0 > AT5G55950.1 | Symbols: | Nucleotide/sugar transporter family protein | chr5:22658112-22660434 REVERSE LENGTH=1677 Length=1677 Score = 2098 bits (1136), Expect = 0.0 Identities = 1391/1508 (92%), Gaps = 41/1508 (3%) Strand=Plus/Plus Query 1 GAAACAATTATACCATGACATTAAAATCCAGattttattcattcattttcgtatt-tttg 59 |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| Sbjct 1 GAAACAATTATACCATGACATTAAAATCCAGATTTTTTTCAGTCATTTTCGTATTATTT- 59 Query 60 gtttaaaagtaaagttttttcCTCCATTAAAACGGAAAATGTGATCTGG-GTTTTTCATC 118 |||||||||||||| |||||| ||||| |||| |||||||||||||||| |||||| | Sbjct 60 GTTTAAAAGTAAAG-TTTTTCTTCCATCAAAATGGAAAATGTGATCTGGTTTTTTTCTTA 118 Query 119 GAAAG-GATTAAAACAATC-G-GAGA-GA--G--AA----TTA-------CAA-TT--T- 155 | ||| |||||||||||| | |||| || | || ||| || || | Sbjct 119 G-AAGATATTAAAACAATCGGAGAGAGGATTGCAAATTTTTTATTTTTGTTAATTTGCTG 177 Query 156 T-TGATGGGTCTGGTTGATTCTTTGTTTGGAAAAGATGCAAGGAAATTTCTCAAACGGAA 214 | ||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| Sbjct 178 TGTGATGGGTCTGGTTGATTCTTTGTTAGGAAAAGATGCAAGAAAATTTCTCAAAAGGAA 237 Query 215 AGATAGTGATGCTGCAGAAGCAGGTCGAGCTTTGGAAGAACTCAGAAGTTCTTTATACAA 274 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 238 AGATAGTGATGCTGCAGAAGCAGGACGAGCTTTGGAAGAACTCAGAAGTTCTTTGTACAA 297 Query 275 TGAGCTTAAAACATCAGAAGGAGCTAAACGGCAACAACAGAGATTTTGTGGCCCTGTTGT 334 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 298 TGAGCTTAAAACATCAGAAGGAGCTAAAAGGCAACAACAGAGATTTTGTGGCCCTGTTGT 357 Query 335 TGCAATGTCCTTCAATTTCTTTGTTGCTGTTGGAATCATCCTTGCCAATAAATTAGTGAT 394 |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 358 TGCAATGTCCTTTAATTTCGTTGTTGCTGTTGGAATCATCCTTGCCAATAAATTAGTGAT 417 Query 395 GGGAAGAGTTGGATTCAATTTTCCAATCTTTTTAACATTGATTCACTATACTGTTGCTTG 454 ||||||||||||||||||||| ||||||||| ||||||||||||| ||||| || ||||| Sbjct 418 GGGAAGAGTTGGATTCAATTTCCCAATCTTTCTAACATTGATTCATTATACCGTGGCTTG 477 Query 455 GATTCTTCTAGCTTTCTTCAAGTCTCTCTCTTTGCTTCCAATGTCTCCTCCATCAAAGAC 514 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 GATTCTTTTAGCTTTCTTCAAGTCTCTCTCTTTGCTTCCAATGTCTCCTCCATCAAAGAC 537 Query 515 TACACCTTTCTCATCTCTCTTCTCTCTTGGAGCTGTCATGGCCTTTGCTTCTGGACTCGC 574 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 538 AACACCTTTCTCATCTCTTTTCTCTCTTGGAGCTGTCATGGCCTTTGCTTCTGGACTCGC 597 Query 575 TAATACTAGTCTCAAACACAACAGCGTTGGATTCTATCAGATGGCTAAGATCGCTGTGAC 634 |||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || || Sbjct 598 TAATACCAGTCTCAAACACAATAGCGTTGGATTCTATCAAATGGCTAAGATCGCAGTTAC 657 Query 635 ACCAACGATTGTTCTTGCAGAGTTTGTTCTCTTCAAGAAAACCATTTCTTCCACCAAGGT 694 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 658 ACCAACGATTGTTCTTGCCGAGTTTGTTCTCTTCAAGAAAACCATTTCTTCCACAAAGGT 717 Query 695 CATGGCATTAGCTGTAGTATCTCTAGGCGTGGCAATCGCGACAGTGACAGATCTAGAATT 754 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 718 CATGGCATTAGCTGTAGTATCTCTAGGTGTGGCAATCGCGACAGTGACGGATCTAGAATT 777 Query 755 CAATTTGTTCGGCGCATTGGTTGCTGTTGCTTGGATTATCCCAAGTGCCATCAATAAAAT 814 |||||||| || ||||| |||||||||||||||||||| ||||||||||| || ||||| Sbjct 778 TAATTTGTTTGGTGCATTAGTTGCTGTTGCTTGGATTATTCCAAGTGCCATTAACAAAAT 837 Query 815 ACTCTGGTCTAATCTTCAGCAACAAGCTAATTGGACTGCCCTAGCATTGATGTGGAAGAC 874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 ACTCTGGTCTAATCTTCAGCAACAAGCTAATTGGACTGCCCTAGCATTGATGTGGAAGAC 897 Query 875 AACACCGTTTACTGTCTTCTTCTTATTGGCGCTTATGCCATGGCTTGACCCACCTGGAGT 934 |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| Sbjct 898 AACACCGTTTACTGTCTTCTTCTTGTTGGCTCTCATGCCATGGCTTGACCCACCTGGAGT 957 Query 935 TTTGCTGTTCAAATGGGATTTAGGTAACTCTTCAGCAATCCTCGTCTCAGCTCTTCTCGG 994 |||||| ||||||||||||||| ||||||||| ||||||||| |||| ||||||||||| Sbjct 958 TTTGCTTTTCAAATGGGATTTAACTAACTCTTCCGCAATCCTCATCTCGGCTCTTCTCGG 1017 Query 995 CTTTCTTCTCCAATGGTCTGGTGCACTCGCTCTCGGGGCAACCTCGGCAACATCTCATGT 1054 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1018 CTTTCTTCTCCAATGGTCTGGTGCACTCGCTCTCGGGGCAACATCAGCAACATCTCATGT 1077 Query 1055 AGTATTAGGGCAATTCAAGACATGTGTGATTTTGCTTGGAGGTTACGTTATCTTCGGCTC 1114 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1078 AGTATTAGGGCAATTCAAGACATGTGTGATCTTGCTTGGAGGTTACGTTATCTTCGGCTC 1137 Query 1115 CGATCCC-GGTATCATCAGCATCTGTGGAGCTGTGGCGGCTCTTGCCGGCATGTCTGTCT 1173 || ||| ||| ||||||||||||| || ||| | || ||||||| ||||||||||||| Sbjct 1138 TGA-CCCTGGTTTCATCAGCATCTGCGGCGCTATCGCAGCTCTTGGAGGCATGTCTGTCT 1196 Query 1174 ACACGTGGCTCAATCTTCCGGGGAAATCCATCGATCACGTTTCAAATAAGCAGCTTCCAA 1233 |||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct 1197 ACACGTGGCTCAATCTTCCGGGGAAATCCATCGATCACATGTCAAACAAGCAGCTGCCAA 1256 Query 1234 AGCAAAACGTTAACGTTTCAAAACCTAAAGCCGAGGCTGACGACGGAGGAGGAGAGACCG 1293 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 AGCAAAACGTCACCGTTTCAAAACCTAAAGCCGAGGCTGACGACGGAGGAGGAGAGACCG 1316 Query 1294 GAGTAACAGTAGTTTCTGTTGACCCACTTCTCTCCAAGACGATAACTGCAAATATCGTAT 1353 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 GAGTAACCGTAGTTTCTGTTGACCCACTTCTCTCCAAGACGATAACTGCAAATATCGTAT 1376 Query 1354 AGTTTTATAACTTAATTAGAT-GCCAAAGAGAAAAAA--TGAGTTT-ACttttttttttC 1409 ||||||| || || ||||||| ||||||||||||||| ||||||| ||||||| || | Sbjct 1377 AGTTTTACAATTTGATTAGATTGCCAAAGAGAAAAAAAATGAGTTTTACTTTTTCTT--C 1434 Query 1410 CTTCAGGTTT-AGTTTGTAAAATTGGTTCAATTTTGATATCAAATTAGTTTAGTAAAAG- 1467 ||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| | Sbjct 1435 -TTCAGGTTTTAGTTTGTAAAATTGGTTCAGTTTTGATATCAAATTAGTGTAGTAAA-GT 1492 Query 1468 ATACTAAT 1475 |||||||| Sbjct 1493 ATACTAAT 1500 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72740589705 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5