BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495680 Length=1582 Score E Sequences producing significant alignments: (Bits) Value AT5G55970.1 | Symbols: | RING/U-box superfamily protein | chr5... 1772 0.0 > AT5G55970.1 | Symbols: | RING/U-box superfamily protein | chr5:22667906-22669545 FORWARD LENGTH=1378 Length=1378 Score = 1772 bits (959), Expect = 0.0 Identities = 1047/1090 (96%), Gaps = 3/1090 (0%) Strand=Plus/Plus Query 486 AAGGTCTAAAATCTTGAAGGATTCAAAAATTTCCGATGAATACACGTTATTCCGTTCAGC 545 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 79 AAGGTCTAAAATCTTGAAGGATTCAAAAATTTCCGATGAATACACGTTATTCCAATCAGC 138 Query 546 CGGAGTTATCTTCCAATAATATCTCGATCACTATTTCATCGTCTGCTTCGTTAAGCTCCT 605 ||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 139 CGGAGTTATCTTCTAGTAATATCACGATCACTATTTCATCGTCTGCTTTGTTAAGCTCCT 198 Query 606 CACCGCGAGGCGAAAACAGTCATGTTGCTGATGGTAATGCTCAAGAGAGGTCTCCATCTT 665 ||||||||||||| |||||||||||||||| || ||||| |||||||||||||||||||| Sbjct 199 CACCGCGAGGCGATAACAGTCATGTTGCTGCTGCTAATGGTCAAGAGAGGTCTCCATCTT 258 Query 666 CCTTTTACATAAGGTTGGCTATGAAGGTATCTAGAGCTAGATGGTTTATCTTCTTGAGAA 725 | ||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 259 CGTTTTATATAAGGCTGGCTATGAAGGTATCTAGAGCTAGATGGTTCATCTTCTTGAGAA 318 Query 726 GAGTGTTTCACTATCAGAACGGTTCAAGATCCGACCTTGGCTCCAATCCTTTCAATTCTA 785 ||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||| Sbjct 319 GAGTGTTTCACTACCAGAACGGTTCAAGATCTGACCTTGGGTCTAATCCTTTCAATTCTA 378 Query 786 GCACTTGGATGATGTCTGAGCTCATTGCTCTGCTTGTTCAGCTCACTGTGATAACATTCA 845 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 379 GCACTTGGATGATGTCTGAGCTCATTGCTCTACTTGTTCAGCTCACTGTGATAACATTCA 438 Query 846 CACTAGCTATCTCCAAAGAAGAGAGACCTATTTGGCCAGTGAGGCTATGGATCACAGGAT 905 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 439 CTCTAGCTATCTCCAAAGAAGAGAGACCAATTTGGCCAGTGAGGCTATGGATCACAGGAT 498 Query 906 ACGATGTGGGATGTCTTCTAAATCTCATGCTGTTATATGGTCGGTATCGTCAACTAGACA 965 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 499 ACGATGTGGGATGTCTTTTGAATCTCATGCTGTTATATGGTCGGTATCGTCAACTAGACA 558 Query 966 TTTACCAAGGAAATGGGTTTGTCCTCGGCGATGTTGAGCAGCAACAGAGAGGCAGAGAAG 1025 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 559 TTAACCAAGGAAATGGGTTTGTCCTTGGCGATGTTGAGCAGCAACAGAGAGGCAGAGAAG 618 Query 1026 AAACAAGGTCCTCTCACTTGATGAACAAATGCAGAACGTCGCTAGAGCTTTTCTTTGCAA 1085 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 619 AAACTAGGTCCTCTCACTTGATGAACAAATGCAGAACGTCGCTAGAGCTTTTCTTTGCGA 678 Query 1086 TTTGGTTTGTGATTGGGAATGTTTGGGTTTTCGATTCTAGGTTCGGTTCTTTCCACCATG 1145 |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| Sbjct 679 TTTGGTTTGTGATTGGAAATGTTTGGGTGTTCGATTCTAGGTTTGGTTCTTTCCACCATG 738 Query 1146 CTCCCAAGCTTCACGTCCTCTGCGtctctcttctatcttggaacgctatctgctattcct 1205 |||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| Sbjct 739 CTCCCAAGCTTCACGTTCTCTGCGTCTCTCTTTTAGCTTGGAACGCTATCTGCTATTCCT 798 Query 1206 ttccctttcttctcttcctcttcctctGTTGCCTTGTTCCTCTCATAAGTAGCCTCCTTG 1265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 TTCCCTTTCTTCTCTTCCTCTTCCTCTGTTGCCTTGTTCCTCTCATAAGTAGCCTCCTTG 858 Query 1266 GATATAACATGAACATGGGATCCTCAGACAGAGCAGCATCAGATGACCAAATCTCTAGTC 1325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 859 GATATAACATGAACATGGGATCCTCAGACAGAGCAGCATCAGATGACCAAATCTCTAGTC 918 Query 1326 TCCCTAGCTGGAAATTCAAACGAATCGACGAAAATGCTTCTGATTCAGATTCAGATTCAG 1385 ||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| Sbjct 919 TCCCTAGCTGGAAATTCAAACGAATCGACGATAGTGCTTCTGATTCTGATTCAGATTCAG 978 Query 1386 CTACTGCAACCGATGATCCAGAGTGTTGTATATGTTTGGCGAAGTATAAAGACAAAGAAG 1445 |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 979 CTACTGTAACTGATGATCCAGAGTGTTGTATATGTTTGGCAAAGTATAAAGACAAAGAAG 1038 Query 1446 AAGTAAGGAAGCTTCCATGT-CAACATAAGTTTCACTCAAAGTGTGTAGATCAATGGCTT 1504 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1039 AAGTAAGGAAGCTTCCATGTTCA-CATAAGTTTCACTCAAAGTGTGTAGATCAATGGCTT 1097 Query 1505 CGTATCATCTCTTGTTGTCCTCTCTGCAAACAAGATCTTCCAAGATGACAAAGCAAAAAC 1564 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1098 CGTATCATCTCTTGTTGTCCTCTCTGCAAACAAGATCTTCCAAGATGACAAAGCAAATAC 1157 Query 1565 CCCTAAAAGC 1574 || ||||||| Sbjct 1158 CC-TAAAAGC 1166 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78112048020 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5